TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_33                                                       67   6e-16

>PHYCAscaffold_33
          Length = 640966

 Score = 67.4 bits (163), Expect(2) = 6e-16
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
 Frame = -2

Query: 14     SKLKVEKNPKDVKQTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSEL 73
              S +    +   +   EWK  L    ++V R  GTE   TG +N H E G YVC  C + +
Sbjct: 179400 SNMSSNSDAVKLSDEEWKQRLTPMQFQVLRLKGTERAGTGEYNKHKETGVYVCAGCKTPV 179221

Query: 74     FNSDAKFWAGCGWPAFSESVGQDANIV------------------RIVDRSHGMHRTEVR 115
              + S  KF +GCGWPAF +++     +V                  + V  + G  RTE+ 
Sbjct: 179220 YTSTTKFDSGCGWPAFYDAIPGAIKVV*SKDLFYFDSIY*ILVLLQAVADADG-RRTEIM 179044

Query: 116    CKTCDAH 122
              C  CD +
Sbjct: 179043 CAKCDGY 179023



 Score = 33.5 bits (75), Expect(2) = 6e-16
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 121    AHLGHVFN-DGPKETTGERYCINSVCMAF 148
              +H+GHVF  +G +  T ER+C+NSV + F
Sbjct: 178963 SHMGHVFKGEGFETPTDERHCVNSVSLVF 178877


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,400,666
Number of Sequences: 917
Number of extensions: 241254
Number of successful extensions: 1258
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 726
length of query: 152
length of database: 21,341,249
effective HSP length: 95
effective length of query: 57
effective length of database: 21,254,134
effective search space: 1211485638
effective search space used: 1211485638
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 101 (43.5 bits)