TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5668  |  | 1 to 2542                                          93   8e-20

>Lt_contig5668  |  | 1 to 2542
          Length = 2542

 Score = 92.8 bits (229), Expect = 8e-20
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
 Frame = -1

Query: 23   KDVKQTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWA 82
            KDV   EW+ VL    Y + RE GT+ P  G +++ F++G YVC  C + L+ S  KF  
Sbjct: 1492 KDVSDAEWRRVLTAHEYHILREKGTD-PVGGKYDEVFDEGEYVCAGCQTPLYLSSMKFAC 1316

Query: 83   GCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDG--PKETTGERYC 140
            GCGWP F + + +    VR      G  R E+ C  C++HLGH+F     P     ER+C
Sbjct: 1315 GCGWPGFYDCIPKK---VREQPDKDG-RRVEIVCNACNSHLGHIFRGEGFPNPPPNERHC 1148

Query: 141  INS 143
            +NS
Sbjct: 1147 VNS 1139


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,430,518
Number of Sequences: 7267
Number of extensions: 163029
Number of successful extensions: 992
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of query: 152
length of database: 10,532,946
effective HSP length: 91
effective length of query: 61
effective length of database: 9,871,649
effective search space: 602170589
effective search space used: 602170589
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)