TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplace...   108   2e-24
gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplace...    46   2e-05

>gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251003, whole genome shotgun
             sequence
          Length = 75386

 Score =  108 bits (271), Expect = 2e-24
 Identities = 60/129 (46%), Positives = 77/129 (59%)
 Frame = +3

Query: 22    PKDVKQTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFW 81
             P  V + E K+ L    + V   + TE P TG ++ HF  G Y C+ C  +LFN   K+ 
Sbjct: 48999 PFKVDKNELKNRLSKI*FDVT*NAATE*PFTGIYDKHFNPG*YNCVVCNIKLFNY*TKYD 49178

Query: 82    AGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGPKETTGERYCI 141
             +G GWPAFS+ V  + NI+  +D+SHGM R EV CK C AHLGHVF+DG    T  RYCI
Sbjct: 49179 SGSGWPAFSQGV--EENILEKIDKSHGMVRKEVLCKNCGAHLGHVFDDG-STNT*LRYCI 49349

Query: 142   NSVCMAFEK 150
             NS  + F K
Sbjct: 49350 NSASIDF*K 49376


>gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251225, whole genome shotgun
             sequence
          Length = 54728

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
 Frame = +1

Query: 39    YRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCG----WPAFSESVG 94
             Y +    G E P TG      E G Y C  C + LF+ + KF    G    W   + SV 
Sbjct: 28993 YWIT*GKGMERPFTGDKWFE*EVGYYHCSVCSTRLFDWNLKFLTTTGMASFWSCLNNSVN 29172

Query: 95    -QDANIVRIVDRSHGM-----------HRTEVRCKTCDAHLGHVFNDGPKETTGERYCIN 142
              +D N+  I +    +            + +  C  CD+ LG VF DGP  +  +RY IN
Sbjct: 29173 IKDDNMYEIEEDFINVI*NNFQK**TVEKKKACCAKCDSFLGLVFFDGPPPSF-KRYSIN 29349

Query: 143   SVCMAFEKK 151
             S  + + KK
Sbjct: 29350 S*AI*YVKK 29376


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.319    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,708,263
Number of Sequences: 2017
Number of extensions: 49024
Number of successful extensions: 115
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 30
length of query: 152
length of database: 16,266,656
effective HSP length: 94
effective length of query: 58
effective length of database: 16,077,058
effective search space: 932469364
effective search space used: 932469364
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 100 (43.1 bits)