TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic cont...    72   5e-18
gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic cont...    72   6e-18

>gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic contig
             CONTIG_16_NC14_v4_210924_216
          Length = 210924

 Score = 72.4 bits (176), Expect(2) = 5e-18
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +2

Query: 21    NPKDVK---QTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSD 77
             N +DVK     EWK  L  E YRV R  GTE   +G +N  +E+G Y+C  C + ++ S 
Sbjct: 89108 NKEDVKPWTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSK 89287

Query: 78    AKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVR 115
              KF +GCGWPAF ++V    N +++    +    T++R
Sbjct: 89288 TKFDSGCGWPAFYDAV---PNAIKVSQFQNCQFNTQLR 89392



 Score = 34.7 bits (78), Expect(2) = 5e-18
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 20/58 (34%)
 Frame = +1

Query: 111   RTEVRCKTCD-------------------AHLGHVF-NDGPKETTGERYCINSVCMAF 148
             RTE+ C  C+                   +H+GHVF N+G    T ER+C+NS  + F
Sbjct: 89428 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 89601


>gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic contig
             CONTIG_430_NC14_v4_18487_112
          Length = 18487

 Score = 72.4 bits (176), Expect(2) = 6e-18
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
 Frame = +1

Query: 21    NPKDVK---QTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSD 77
             N +DVK     EWK  L  E YRV R  GTE   +G +N  +E+G Y+C  C + ++ S 
Sbjct: 11350 NKEDVKPWTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSK 11529

Query: 78    AKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVR 115
              KF +GCGWPAF ++V    N +++    +    T++R
Sbjct: 11530 TKFDSGCGWPAFYDAV---PNAIKVSQFQNCQFNTQLR 11634



 Score = 34.7 bits (78), Expect(2) = 6e-18
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 20/58 (34%)
 Frame = +3

Query: 111   RTEVRCKTCD-------------------AHLGHVF-NDGPKETTGERYCINSVCMAF 148
             RTE+ C  C+                   +H+GHVF N+G    T ER+C+NS  + F
Sbjct: 11670 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 11843


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,110,900
Number of Sequences: 3816
Number of extensions: 112572
Number of successful extensions: 557
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 488
length of query: 152
length of database: 10,913,379
effective HSP length: 91
effective length of query: 61
effective length of database: 10,566,123
effective search space: 644533503
effective search space used: 644533503
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 99 (42.7 bits)