TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) #
Drosophila melanogaster # Complete
         (197 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_33                                                       93   3e-23

>PHYCAscaffold_33
          Length = 640966

 Score = 92.8 bits (229), Expect(2) = 3e-23
 Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
 Frame = -2

Query: 1      MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFS 60
              M + S+ V ++ EE ++RLTP+Q+QV +  GTER  TG YNKH E GVY C  C   +++
Sbjct: 179394 MSSNSDAVKLSDEEWKQRLTPMQFQVLRLKGTERAGTGEYNKHKETGVYVCAGCKTPVYT 179215

Query: 61     SETKYDSGCGWPAFNDVLDKG------------------KVTLHRDASIPGMVRTEVRCS 102
              S TK+DSGCGWPAF D +                      V L   A   G  RTE+ C+
Sbjct: 179214 STTKFDSGCGWPAFYDAIPGAIKVV*SKDLFYFDSIY*ILVLLQAVADADGR-RTEIMCA 179038

Query: 103    RCSAH 107
              +C  +
Sbjct: 179037 KCDGY 179023



 Score = 33.5 bits (75), Expect(2) = 3e-23
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 147    NAHMGHVF--EDGPKPTRKRYCINSASIEF 174
              ++HMGHVF  E    PT +R+C+NS S+ F
Sbjct: 178966 SSHMGHVFKGEGFETPTDERHCVNSVSLVF 178877


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,263,555
Number of Sequences: 917
Number of extensions: 356099
Number of successful extensions: 1728
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1180
Number of HSP's gapped (non-prelim): 987
length of query: 197
length of database: 21,341,249
effective HSP length: 99
effective length of query: 98
effective length of database: 21,250,466
effective search space: 2082545668
effective search space used: 2082545668
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 103 (44.3 bits)