TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000089_1.0 # Protein # Selenoprotein R (SelR) # Drosophila melanogaster # Complete (197 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_7 88 1e-17 scaffold_33 79 5e-15 scaffold_65 77 2e-14 scaffold_21 77 2e-14 scaffold_1 65 1e-10 scaffold_20 63 3e-10 >scaffold_7 Length = 2770240 Score = 87.8 bits (216), Expect = 1e-17 Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 8/185 (4%) Frame = -2 Query: 2 DNKSEKVTV--------NKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIV 53 D + EK TV N E R+ P++ V + TE FT N G+Y C Sbjct: 1122450 DEEKEKETVETENPMSTNDEIERRTWNPLRLMVLKLGFTELKFTSPLNYEKRDGLYNCAY 1122271 Query: 54 CHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVFD 113 C DLF S+ KY+ GWP+F G VT ++ R E +C RC +H+GHVF Sbjct: 1122270 CDLDLFDSDGKYEPNSGWPSFWRSTKDGHVTYKKEWD----GRLEAKCGRCDSHLGHVFL 1122103 Query: 114 DGPPPKHRRFCINSASIDFVKKRIRTEVRCARCNAHMGHVFEDGPKPTRKRYCINSASIE 173 DGP P + D ++ ++ R R N ++ R+C+N AS+ Sbjct: 1122102 DGPLP-------SKVEKDLLENAPASDPRGIRTNGYL------------PRFCMNGASLN 1121980 Query: 174 FVNAD 178 F +D Sbjct: 1121979 FQKSD 1121965 >scaffold_33 Length = 615088 Score = 79.0 bits (193), Expect = 5e-15 Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 7/108 (6%) Frame = -1 Query: 13 EELRKRLTPVQYQVTQEAGTERPFTGCYNK-------HYEKGVYQCIVCHQDLFSSETKY 65 EE ++ L+P QY + ++ GTE P + NK ++G + C C+ LF ++ K+ Sbjct: 334714 EEWKEILSPEQYYILRKEGTESPNSSILNKISVEKNGKEDEGTFSCGGCNAALFVADAKF 334535 Query: 66 DSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVFD 113 DSG GWP+F + V L+ D + + RTEV CS+C H+GHVF+ Sbjct: 334534 DSGTGWPSFFAPITSSAVDLNTDYKLI-VPRTEVTCSQCGGHLGHVFE 334394 >scaffold_65 Length = 283846 Score = 77.0 bits (188), Expect = 2e-14 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 7/127 (5%) Frame = +2 Query: 13 EELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGCGWP 72 +E + LT QY + + GTE+ ++ G Y C C LF S+ K+ SG GWP Sbjct: 16025 DEWKSTLTTRQYNILRTGGTEQQYSSVLEAEERTGTYNCAGCSTPLFLSKEKFHSGTGWP 16204 Query: 73 AFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVFDDG------PPPK-HRRFCI 125 +F L G ++ + +EVRC C HMG +F+DG P K +RFCI Sbjct: 16205 SFASAL-VGVEVEKKNMLAATLGGSEVRCKNCGGHMGDLFNDGYIFPGTPAEKTGKRFCI 16381 Query: 126 NSASIDF 132 + +++F Sbjct: 16382 DGVALNF 16402 >scaffold_21 Length = 951085 Score = 77.0 bits (188), Expect = 2e-14 Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 7/127 (5%) Frame = +3 Query: 13 EELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGCGWP 72 +E + LT QY + + GTE+ ++ G Y C C LF S+ K+ SG GWP Sbjct: 171426 DEWKSTLTTRQYNILRTGGTEQQYSSVLEAEERTGTYNCAGCSTPLFLSKEKFHSGTGWP 171605 Query: 73 AFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVFDDG------PPPK-HRRFCI 125 +F L G ++ + +EVRC C HMG +F+DG P K +RFCI Sbjct: 171606 SFASAL-VGVEVEKKNMLAATLGGSEVRCKNCGGHMGDLFNDGYIFPGTPAEKTGKRFCI 171782 Query: 126 NSASIDF 132 + +++F Sbjct: 171783 DGVALNF 171803 >scaffold_1 Length = 5926375 Score = 64.7 bits (156), Expect = 1e-10 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 22/148 (14%) Frame = -2 Query: 7 KVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEK---GVYQCIVCHQDLFSSET 63 KV + E L+ QY V ++ GTER + N K G Y C C+ LF+S + Sbjct: 4523994 KVQHSDREWSYILSGQQYNVLRQGGTERQKSSILNTFTSKDHVGTYVCAGCNTPLFTSAS 4523815 Query: 64 KYDSGCGWPAF-----------NDVLDKGKVTLHR-DASIPGMVRTEVRCSRCSAHMGHV 111 K+ SG GWP+F N++ G V + + D + EVRC+ C H+G + Sbjct: 4523814 KFSSGTGWPSFAYSYTGIGGGGNEI---GGVEIEQLDPIRSALNGREVRCNTCGGHLGDL 4523644 Query: 112 FDDG-------PPPKHRRFCINSASIDF 132 F+DG +R+CI+ +++ F Sbjct: 4523643 FNDGYMYIGTSAFDSGQRYCIDGSALIF 4523560 >scaffold_20 Length = 1108856 Score = 63.2 bits (152), Expect = 3e-10 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 31/157 (19%) Frame = +3 Query: 7 KVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEK---GVYQCIVCHQDLFSSET 63 KV + E L+ QY V ++ GTER + N K G Y C C+ LF+SE+ Sbjct: 194034 KVQHSDREWSYILSGQQYNVLRQGGTERQKSSILNTFTSKDHVGTYVCAGCNTPLFTSES 194213 Query: 64 KYDSGCGWPAF-----------NDVLDKGK---------VTLHR-DASIPGMVRTEVRCS 102 K+ SG GWP+F N D G V + + D + EVRC+ Sbjct: 194214 KFSSGTGWPSFAYSSTSTDSISNTKSDGGSGGGGNEIGGVEIEQLDPIRSALNGREVRCN 194393 Query: 103 RCSAHMGHVFDDG-------PPPKHRRFCINSASIDF 132 C H+G +F+DG +R+CI+ +++ F Sbjct: 194394 TCGGHLGDLFNDGYMYIGTSAFDSGQRYCIDGSALIF 194504 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.321 0.135 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,579,929 Number of Sequences: 271 Number of extensions: 350359 Number of successful extensions: 1514 Number of sequences better than 1.0e-04: 6 Number of HSP's better than 0.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 1331 Number of HSP's gapped (non-prelim): 405 length of query: 197 length of database: 26,846,802 effective HSP length: 101 effective length of query: 96 effective length of database: 26,819,431 effective search space: 2574665376 effective search space used: 2574665376 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 104 (44.7 bits)