TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5668  |  | 1 to 2542                                          90   8e-19

>Lt_contig5668  |  | 1 to 2542
          Length = 2542

 Score = 90.1 bits (222), Expect = 8e-19
 Identities = 51/130 (39%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
 Frame = -1

Query: 46   SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
            S  E R+ LT  +YH+ +EKGT+    G+Y    D G Y C  C TPL+ S  KF  G G
Sbjct: 1483 SDAEWRRVLTAHEYHILREKGTDPV-GGKYDEVFDEGEYVCAGCQTPLYLSSMKFACGCG 1307

Query: 106  WPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF--DDGPR-PTGKRYCINSA 162
            WP F+D I  +     D       RVE  C+ C +HLGHIF  +  P  P  +R+C+NS 
Sbjct: 1306 WPGFYDCIPKKVREQPDKDG---RRVEIVCNACNSHLGHIFRGEGFPNPPPNERHCVNST 1136

Query: 163  ALSFTPADSS 172
            ++   P   S
Sbjct: 1135 SIILRPTQKS 1106


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,588,364
Number of Sequences: 7267
Number of extensions: 154193
Number of successful extensions: 962
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of query: 192
length of database: 10,532,946
effective HSP length: 94
effective length of query: 98
effective length of database: 9,849,848
effective search space: 965285104
effective search space used: 965285104
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)