TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_28                                                              90   9e-19

>contig_28
          Length = 1171725

 Score = 90.1 bits (222), Expect = 9e-19
 Identities = 50/126 (39%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
 Frame = +1

Query: 46      SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
               S +E R+ LT  +YH+ +EKGT+    G+Y    D G Y C  C TPL+ S  KF  G G
Sbjct: 1054270 SDEEWRRILTAQEYHILREKGTDPV-GGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGCG 1054446

Query: 106     WPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF-DDGPR--PTGKRYCINSA 162
               WP F+D I        D       RVE  C+ C +HLGH+F  +G R  P  +R+C+NS 
Sbjct: 1054447 WPGFYDCIPKRVREQPDKDG---RRVEIVCNACNSHLGHVFRKEGFRNPPPNERHCVNST 1054617

Query: 163     ALSFTP 168
               ++   P
Sbjct: 1054618 SIILRP 1054635


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,842,703
Number of Sequences: 36
Number of extensions: 159349
Number of successful extensions: 1015
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 220
length of query: 192
length of database: 10,814,999
effective HSP length: 95
effective length of query: 97
effective length of database: 10,811,579
effective search space: 1048723163
effective search space used: 1048723163
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)