TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplace...   116   2e-26
gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplace...    67   1e-11

>gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251003, whole genome shotgun
             sequence
          Length = 75386

 Score =  116 bits (290), Expect = 2e-26
 Identities = 60/120 (50%), Positives = 73/120 (60%)
 Frame = +3

Query: 47    QQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGW 106
             + EL+ RL+ + + VT    TE  F G Y  H +PG Y CVVC   LF   TK+DSGSGW
Sbjct: 49014 KNELKNRLSKI*FDVT*NAATE*PFTGIYDKHFNPG*YNCVVCNIKLFNY*TKYDSGSGW 49193

Query: 107   PSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSF 166
             P+F   +  E I    D S+GM R E  C  CGAHLGH+FDDG   T  RYCINSA++ F
Sbjct: 49194 PAFSQGV-EENILEKIDKSHGMVRKEVLCKNCGAHLGHVFDDGSTNT*LRYCINSASIDF 49370


>gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251225, whole genome shotgun
             sequence
          Length = 54728

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 18/132 (13%)
 Frame = +1

Query: 51    RKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFH 110
             R  +TP  Y +T  KG E  F G+     + G Y C VC T LF    KF + +G  SF 
Sbjct: 28969 RLNMTPH*YWIT*GKGMERPFTGDKWFE*EVGYYHCSVCSTRLFDWNLKFLTTTGMASFW 29148

Query: 111   DVINSEAITFTDDFSY------------------GMHRVETSCSQCGAHLGHIFDDGPRP 152
               +N+ ++   DD  Y                   + + +  C++C + LG +F DGP P
Sbjct: 29149 SCLNN-SVNIKDDNMYEIEEDFINVI*NNFQK**TVEKKKACCAKCDSFLGLVFFDGPPP 29325

Query: 153   TGKRYCINSAAL 164
             + KRY INS A+
Sbjct: 29326 SFKRYSINS*AI 29361


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,661,535
Number of Sequences: 2017
Number of extensions: 57591
Number of successful extensions: 71
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 17
length of query: 192
length of database: 16,266,656
effective HSP length: 97
effective length of query: 95
effective length of database: 16,071,007
effective search space: 1526745665
effective search space used: 1526745665
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 102 (43.9 bits)