TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3 (SelR3) # Homo sapiens # Complete (192 letters) Database: F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_65 93 2e-19 scaffold_21 93 2e-19 scaffold_33 90 2e-18 scaffold_1 86 3e-17 scaffold_20 85 8e-17 scaffold_7 78 8e-15 scaffold_91 50 2e-06 >scaffold_65 Length = 283846 Score = 93.2 bits (230), Expect = 2e-19 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Frame = +2 Query: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105 S E + LT QY++ + GTE + + G Y C C TPLF S+ KF SG+G Sbjct: 16019 SDDEWKSTLTTRQYNILRTGGTEQQYSSVLEAEERTGTYNCAGCSTPLFLSKEKFHSGTG 16198 Query: 106 WPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDG-------PRPTGKRYC 158 WPSF + + + + + E C CG H+G +F+DG TGKR+C Sbjct: 16199 WPSFASALVGVEVEKKNMLAATLGGSEVRCKNCGGHMGDLFNDGYIFPGTPAEKTGKRFC 16378 Query: 159 INSAALSFTPADSS 172 I+ AL+F P + + Sbjct: 16379 IDGVALNFKPDEGT 16420 >scaffold_21 Length = 951085 Score = 93.2 bits (230), Expect = 2e-19 Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Frame = +3 Query: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105 S E + LT QY++ + GTE + + G Y C C TPLF S+ KF SG+G Sbjct: 171420 SDDEWKSTLTTRQYNILRTGGTEQQYSSVLEAEERTGTYNCAGCSTPLFLSKEKFHSGTG 171599 Query: 106 WPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDG-------PRPTGKRYC 158 WPSF + + + + + E C CG H+G +F+DG TGKR+C Sbjct: 171600 WPSFASALVGVEVEKKNMLAATLGGSEVRCKNCGGHMGDLFNDGYIFPGTPAEKTGKRFC 171779 Query: 159 INSAALSFTPADSS 172 I+ AL+F P + + Sbjct: 171780 IDGVALNFKPDEGT 171821 >scaffold_33 Length = 615088 Score = 90.1 bits (222), Expect = 2e-18 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 7/109 (6%) Frame = -1 Query: 46 SQQELRKRLTPLQYHVTQEKGTESAFEG-------EYTHHKDPGIYKCVVCGTPLFKSET 98 + +E ++ L+P QY++ +++GTES E +D G + C C LF ++ Sbjct: 334720 TDEEWKEILSPEQYYILRKEGTESPNSSILNKISVEKNGKEDEGTFSCGGCNAALFVADA 334541 Query: 99 KFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFD 147 KFDSG+GWPSF I S A+ D+ + R E +CSQCG HLGH+F+ Sbjct: 334540 KFDSGTGWPSFFAPITSSAVDLNTDYKLIVPRTEVTCSQCGGHLGHVFE 334394 >scaffold_1 Length = 5926375 Score = 86.3 bits (212), Expect = 3e-17 Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 20/151 (13%) Frame = -2 Query: 42 KVVFSQQELRKRLTPLQYHVTQEKGTE---SAFEGEYTHHKDPGIYKCVVCGTPLFKSET 98 KV S +E L+ QY+V ++ GTE S+ +T G Y C C TPLF S + Sbjct: 4523994 KVQHSDREWSYILSGQQYNVLRQGGTERQKSSILNTFTSKDHVGTYVCAGCNTPLFTSAS 4523815 Query: 99 KFDSGSGWPSF----------HDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDD 148 KF SG+GWPSF + I I D ++ E C+ CG HLG +F+D Sbjct: 4523814 KFSSGTGWPSFAYSYTGIGGGGNEIGGVEIEQLDPIRSALNGREVRCNTCGGHLGDLFND 4523635 Query: 149 G-------PRPTGKRYCINSAALSFTPADSS 172 G +G+RYCI+ +AL F P+ ++ Sbjct: 4523634 GYMYIGTSAFDSGQRYCIDGSALIFKPSSTT 4523542 Score = 50.4 bits (119), Expect = 2e-06 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Frame = -3 Query: 82 GIYKCVVCGTPLFKSE--TKFDSGSGWPSFHDVIN-SEAITFTDDFSYGMHRVETSCSQC 138 GI+ + G PLF S S SGW SF ++ S I + R+E C++ Sbjct: 3288230 GIFLTAIGGLPLFASTDLAPTTSSSGWLSFSRPLDISHVIRIDPEHKSTDRRIEVICARS 3288051 Query: 139 GAHLGHIFDDGPRPTGKRYCINSAALSFTPADS 171 HLGH F GP + YCIN++AL F P S Sbjct: 3288050 KLHLGHYF--GP---SEGYCINTSALRFIPVQS 3287967 >scaffold_20 Length = 1108856 Score = 84.7 bits (208), Expect = 8e-17 Identities = 54/163 (33%), Positives = 80/163 (49%), Gaps = 32/163 (19%) Frame = +3 Query: 42 KVVFSQQELRKRLTPLQYHVTQEKGTE---SAFEGEYTHHKDPGIYKCVVCGTPLFKSET 98 KV S +E L+ QY+V ++ GTE S+ +T G Y C C TPLF SE+ Sbjct: 194034 KVQHSDREWSYILSGQQYNVLRQGGTERQKSSILNTFTSKDHVGTYVCAGCNTPLFTSES 194213 Query: 99 KFDSGSGWPSF-HDVINSEAITFT---------------------DDFSYGMHRVETSCS 136 KF SG+GWPSF + ++++I+ T D ++ E C+ Sbjct: 194214 KFSSGTGWPSFAYSSTSTDSISNTKSDGGSGGGGNEIGGVEIEQLDPIRSALNGREVRCN 194393 Query: 137 QCGAHLGHIFDDG-------PRPTGKRYCINSAALSFTPADSS 172 CG HLG +F+DG +G+RYCI+ +AL F P ++ Sbjct: 194394 TCGGHLGDLFNDGYMYIGTSAFDSGQRYCIDGSALIFKPTSTT 194522 >scaffold_7 Length = 2770240 Score = 78.2 bits (191), Expect = 8e-15 Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 23/143 (16%) Frame = -2 Query: 51 RKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFH 110 R+ PL+ V + TE F + K G+Y C C LF S+ K++ SGWPSF Sbjct: 1122384 RRTWNPLRLMVLKLGFTELKFTSPLNYEKRDGLYNCAYCDLDLFDSDGKYEPNSGWPSFW 1122205 Query: 111 DVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTG---------------- 154 +T+ ++ R+E C +C +HLGH+F DGP P+ Sbjct: 1122204 RSTKDGHVTYKKEWD---GRLEAKCGRCDSHLGHVFLDGPLPSKVEKDLLENAPASDPRG 1122034 Query: 155 -------KRYCINSAALSFTPAD 170 R+C+N A+L+F +D Sbjct: 1122033 IRTNGYLPRFCMNGASLNFQKSD 1121965 >scaffold_91 Length = 175871 Score = 50.4 bits (119), Expect = 2e-06 Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 3/93 (3%) Frame = -1 Query: 82 GIYKCVVCGTPLFKSE--TKFDSGSGWPSFHDVIN-SEAITFTDDFSYGMHRVETSCSQC 138 GI+ + G PLF S S SGW SF ++ S I + R+E C++ Sbjct: 25346 GIFLTAIGGLPLFASTDLAPTTSSSGWLSFSRPLDISHVIRIDPEHKSTDRRIEVICARS 25167 Query: 139 GAHLGHIFDDGPRPTGKRYCINSAALSFTPADS 171 HLGH F GP + YCIN++AL F P S Sbjct: 25166 KLHLGHYF--GP---SEGYCINTSALRFIPVQS 25083 Database: F.cylindrus/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.316 0.132 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,384,613 Number of Sequences: 271 Number of extensions: 244377 Number of successful extensions: 1048 Number of sequences better than 1.0e-04: 7 Number of HSP's better than 0.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 894 Number of HSP's gapped (non-prelim): 370 length of query: 192 length of database: 26,846,802 effective HSP length: 101 effective length of query: 91 effective length of database: 26,819,431 effective search space: 2440568221 effective search space used: 2440568221 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 104 (44.7 bits)