TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...   100   8e-22

>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score =  100 bits (248), Expect = 8e-22
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
 Frame = -1

Query: 73      GEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVE 132
               GEY    D G+Y C  CG PL+ S++KF+SG GWP+F + +   A+T  +D S+GM R E
Sbjct: 2340550 GEYDKKFDDGVYGCAGCGAPLYSSKSKFNSGCGWPAFFEALPG-ALTIFEDKSHGMVRTE 2340374

Query: 133     TSCSQCGAHLGHIF--DDGPRPTGKRYCINSAALSFTP 168
                 C  CG HLGH+F  +    P  +R+C+NS +L FTP
Sbjct: 2340373 IVCKNCGGHLGHVFKGEGFKNPIDERHCVNSISLKFTP 2340260


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,768,583
Number of Sequences: 25
Number of extensions: 81479
Number of successful extensions: 290
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 55
length of query: 192
length of database: 10,339,736
effective HSP length: 94
effective length of query: 98
effective length of database: 10,337,386
effective search space: 1013063828
effective search space used: 1013063828
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)