TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig980  |  | 1 to 109705                                         89   2e-18

>Cf_Contig980  |  | 1 to 109705
          Length = 109705

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 3/126 (2%)
 Frame = +2

Query: 47   QQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGW 106
            + E +  LTP QY + +EKGT+    G+Y    + G Y C  C TPL+ S  KF  G GW
Sbjct: 4742 EAEWKAILTPTQYRILREKGTDPV-GGKYDDLFEDGEYVCAACKTPLYTSAMKFACGCGW 4918

Query: 107  PSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIF-DDGPR--PTGKRYCINSAA 163
            P F D I        D       RVE  C+ C +HLGH+F ++G R  P  +R+C+N+ +
Sbjct: 4919 PGFWDCIPKTVRELPDKDG---RRVEIVCNACNSHLGHVFRNEGFRNPPPNERHCVNNTS 5089

Query: 164  LSFTPA 169
            + F PA
Sbjct: 5090 VIFIPA 5107


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,785,890
Number of Sequences: 1089
Number of extensions: 172105
Number of successful extensions: 1138
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 590
length of query: 192
length of database: 12,349,441
effective HSP length: 95
effective length of query: 97
effective length of database: 12,245,986
effective search space: 1187860642
effective search space used: 1187860642
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)