TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5668  |  | 1 to 2542                                          84   8e-17

>Lt_contig5668  |  | 1 to 2542
          Length = 2542

 Score = 83.6 bits (205), Expect = 8e-17
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
 Frame = -1

Query: 58   SLATCELPLAK--------SEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVC 109
            S   C  PL K        +EW++ LT  ++++ REKGT+P   G Y    + G Y C  
Sbjct: 1534 SRTNCAGPLEKDGSKDVSDAEWRRVLTAHEYHILREKGTDP-VGGKYDEVFDEGEYVCAG 1358

Query: 110  CDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAH 169
            C +PL+ S  K+  G GWP F +       ++                R E+VC  C +H
Sbjct: 1357 CQTPLYLSSMKFACGCGWPGFYDCIPKKVREQ----------PDKDGRRVEIVCNACNSH 1208

Query: 170  LGHVFPDGPGPN---GQRFCINSVALKFKP 196
            LGH+F     PN    +R C+NS ++  +P
Sbjct: 1207 LGHIFRGEGFPNPPPNERHCVNSTSIILRP 1118


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,968,139
Number of Sequences: 7267
Number of extensions: 171710
Number of successful extensions: 1074
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of query: 199
length of database: 10,532,946
effective HSP length: 94
effective length of query: 105
effective length of database: 9,849,848
effective search space: 1034234040
effective search space used: 1034234040
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)