TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_28                                                              84   9e-17

>contig_28
          Length = 1171725

 Score = 83.6 bits (205), Expect = 9e-17
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
 Frame = +1

Query: 66      LAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGT 125
               ++  EW++ LT +++++ REKGT+P   G Y +  + G Y C  C +PL+ S  K+  G 
Sbjct: 1054267 MSDEEWRRILTAQEYHILREKGTDP-VGGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGC 1054443

Query: 126     GWPSFSEAHGTSGSDESHTGILRRL--DTSLGSARTEVVCKQCEAHLGHVFPD----GPG 179
               GWP F +             I +R+         R E+VC  C +HLGHVF       P 
Sbjct: 1054444 GWPGFYDC------------IPKRVREQPDKDGRRVEIVCNACNSHLGHVFRKEGFRNPP 1054587

Query: 180     PNGQRFCINSVALKFKP 196
               PN +R C+NS ++  +P
Sbjct: 1054588 PN-ERHCVNSTSIILRP 1054635


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,197,387
Number of Sequences: 36
Number of extensions: 176858
Number of successful extensions: 1054
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 275
length of query: 199
length of database: 10,814,999
effective HSP length: 95
effective length of query: 104
effective length of database: 10,811,579
effective search space: 1124404216
effective search space used: 1124404216
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)