TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplace...   102   2e-22
gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplace...    60   1e-09

>gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251003, whole genome shotgun
             sequence
          Length = 75386

 Score =  102 bits (255), Expect = 2e-22
 Identities = 57/127 (44%), Positives = 77/127 (60%)
 Frame = +3

Query: 68    KSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGW 127
             K+E + +L+   F VT    TE PF+GIY  +   G Y+CV C+  LF+   KY SG+GW
Sbjct: 49014 KNELKNRLSKI*FDVT*NAATE*PFTGIYDKHFNPG*YNCVVCNIKLFNY*TKYDSGSGW 49193

Query: 128   PSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCI 187
             P+FS+     G +E+   IL ++D S G  R EV+CK C AHLGHVF DG      R+CI
Sbjct: 49194 PAFSQ-----GVEEN---ILEKIDKSHGMVRKEVLCKNCGAHLGHVFDDGSTNT*LRYCI 49349

Query: 188   NSVALKF 194
             NS ++ F
Sbjct: 49350 NSASIDF 49370


>gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251225, whole genome shotgun
             sequence
          Length = 54728

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
 Frame = +1

Query: 75    LTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAH 134
             +TP  +++T  KG E PF+G      E G YHC  C + LF    K+ + TG  SF    
Sbjct: 28978 MTPH*YWIT*GKGMERPFTGDKWFE*EVGYYHCSVCSTRLFDWNLKFLTTTGMASFWSCL 29157

Query: 135   GTSGS---------DESHTGIL-RRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQR 184
               S +         +E    ++           + +  C +C++ LG VF DGP P+ +R
Sbjct: 29158 NNSVNIKDDNMYEIEEDFINVI*NNFQK**TVEKKKACCAKCDSFLGLVFFDGPPPSFKR 29337

Query: 185   FCINSVAL 192
             + INS A+
Sbjct: 29338 YSINS*AI 29361


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,139,753
Number of Sequences: 2017
Number of extensions: 85161
Number of successful extensions: 109
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 20
length of query: 199
length of database: 16,266,656
effective HSP length: 98
effective length of query: 101
effective length of database: 16,068,990
effective search space: 1622967990
effective search space used: 1622967990
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 102 (43.9 bits)