TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso...    97   1e-20

>gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole
               genome shotgun sequence
          Length = 5125352

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 66/203 (32%), Positives = 85/203 (41%), Gaps = 67/203 (33%)
 Frame = +2

Query: 63      ELPLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYC 122
               ++ L++ EW+ KLTP QF V REKGTE P SG Y  N E G+Y+C  CD+PLF SE K+ 
Sbjct: 5047724 KMNLSEDEWRVKLTPAQFKVLREKGTERPDSGEYNKNYEKGVYNCAACDTPLFKSEHKFS 5047903

Query: 123     SGTGWPSFSEAHGTSGSDESHTGILRRLDTSL-GSARTEVVCKQC--------------- 166
               SG GWPSF         D     ++   D SL G  RTE+ C +C               
Sbjct: 5047904 SGCGWPSF--------YDSIPGALVLHEDPSLPGRPRTEICCAKCVSKKKRKKKEKKIHL 5048059

Query: 167     -------------EAHLGHVF--------------------------------------P 175
                             +H+GHVF                                       
Sbjct: 5048060 Y*YFI*IL*SII*GSHMGHVFKVCDFYFIYCFFFF*KKKY*ICPIYLHLLLLLLLLF*GE 5048239

Query: 176     DGPGPNGQRFCINSVALKFKPRK 198
                   P  QR C+NS++LKF P+K
Sbjct: 5048240 KFNTPIDQRHCVNSISLKFLPKK 5048308


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,304,204
Number of Sequences: 6
Number of extensions: 68107
Number of successful extensions: 249
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 17
length of query: 199
length of database: 11,314,357
effective HSP length: 95
effective length of query: 104
effective length of database: 11,313,787
effective search space: 1176633848
effective search space used: 1176633848
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)