TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig980  |  | 1 to 109705                                         87   7e-18

>Cf_Contig980  |  | 1 to 109705
          Length = 109705

 Score = 87.4 bits (215), Expect = 7e-18
 Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
 Frame = +2

Query: 68   KSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGW 127
            ++EW+  LTP Q+ + REKGT+P   G Y +  E G Y C  C +PL++S  K+  G GW
Sbjct: 4742 EAEWKAILTPTQYRILREKGTDP-VGGKYDDLFEDGEYVCAACKTPLYTSAMKFACGCGW 4918

Query: 128  PSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPD----GPGPNGQ 183
            P F +    +         +R L    G  R E+VC  C +HLGHVF +     P PN +
Sbjct: 4919 PGFWDCIPKT---------VRELPDKDG-RRVEIVCNACNSHLGHVFRNEGFRNPPPN-E 5065

Query: 184  RFCINSVALKFKP 196
            R C+N+ ++ F P
Sbjct: 5066 RHCVNNTSVIFIP 5104


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,978,769
Number of Sequences: 1089
Number of extensions: 184772
Number of successful extensions: 1238
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 624
length of query: 199
length of database: 12,349,441
effective HSP length: 96
effective length of query: 103
effective length of database: 12,244,897
effective search space: 1261224391
effective search space used: 1261224391
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 102 (43.9 bits)