TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic cont...    67   4e-16
gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic cont...    67   4e-16

>gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic contig
             CONTIG_16_NC14_v4_210924_216
          Length = 210924

 Score = 67.4 bits (163), Expect(2) = 4e-16
 Identities = 31/69 (44%), Positives = 42/69 (60%)
 Frame = +2

Query: 65    PLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSG 124
             P    EW+ +L PEQ+ V R KGTE   SG Y    E G Y C  C +P+++S+ K+ SG
Sbjct: 89126 PWTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSKTKFDSG 89305

Query: 125   TGWPSFSEA 133
              GWP+F +A
Sbjct: 89306 CGWPAFYDA 89332



 Score = 34.3 bits (77), Expect(2) = 4e-16
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 21/58 (36%)
 Frame = +1

Query: 158   RTEVVCKQCE-------------------AHLGHVFPDG--PGPNGQRFCINSVALKF 194
             RTE+VC  C                    +H+GHVF +   P P  +R C+NS +L F
Sbjct: 89428 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 89601


>gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic contig
             CONTIG_430_NC14_v4_18487_112
          Length = 18487

 Score = 67.4 bits (163), Expect(2) = 4e-16
 Identities = 31/69 (44%), Positives = 42/69 (60%)
 Frame = +1

Query: 65    PLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSG 124
             P    EW+ +L PEQ+ V R KGTE   SG Y    E G Y C  C +P+++S+ K+ SG
Sbjct: 11368 PWTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSKTKFDSG 11547

Query: 125   TGWPSFSEA 133
              GWP+F +A
Sbjct: 11548 CGWPAFYDA 11574



 Score = 34.3 bits (77), Expect(2) = 4e-16
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 21/58 (36%)
 Frame = +3

Query: 158   RTEVVCKQCE-------------------AHLGHVFPDG--PGPNGQRFCINSVALKF 194
             RTE+VC  C                    +H+GHVF +   P P  +R C+NS +L F
Sbjct: 11670 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 11843


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,078,987
Number of Sequences: 3816
Number of extensions: 108440
Number of successful extensions: 573
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 420
length of query: 199
length of database: 10,913,379
effective HSP length: 95
effective length of query: 104
effective length of database: 10,550,859
effective search space: 1097289336
effective search space used: 1097289336
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 101 (43.5 bits)