TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig5668  |  | 1 to 2542                                          50   3e-07

>Lt_contig5668  |  | 1 to 2542
          Length = 2542

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
 Frame = -1

Query: 9    GEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK 68
            G  +   F+ G YVCA C   L+ S  K+A    WP F + I    V ++P+ +    ++
Sbjct: 1408 GGKYDEVFDEGEYVCAGCQTPLYLSSMKFACGCGWPGFYDCI-PKKVREQPDKD-GRRVE 1235

Query: 69   VSCGKCGNGLGHEFLNDG--PKPGQSRFUIFSSSLKFVPKGK 108
            + C  C + LGH F  +G    P   R  + S+S+   P  K
Sbjct: 1234 IVCNACNSHLGHIFRGEGFPNPPPNERHCVNSTSIILRPTQK 1109


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,855,771
Number of Sequences: 7267
Number of extensions: 135513
Number of successful extensions: 777
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of query: 116
length of database: 10,532,946
effective HSP length: 86
effective length of query: 30
effective length of database: 9,907,984
effective search space: 297239520
effective search space used: 297239520
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)