TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22832596|gb|AAF48985.2| CG12788 [Drosophila melanogaster]
         (292 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_17                                                       38   0.015
PHYCAscaffold_5                                                        35   0.13 
PHYCAscaffold_42                                                       32   0.81 

>PHYCAscaffold_17
          Length = 985188

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
 Frame = +1

Query: 6     LVALIGLPAAGKSSLCSWLLGQQAALRVRHIVHLCYDDFLDATPSADLAYKEQRGRIFK- 64
             LV + GLP AGK++L   L+    ++  R    + +DD  +   +A+    E     +K 
Sbjct: 94639 LVLVCGLPGAGKTTLVKQLVATACSISSRLHERISFDDLYEQHVTAEGKPGEFDPEKWKM 94818

Query: 65    ----VIEKLISAIQEDTDWPPQVRRISSSGDYNSGRHLILCDDNFYYRSMRYKLYQL 117
                 +++++ + ++E  D  P  R           + ++L DDNF YRS+R + + L
Sbjct: 94819 CQQDMLKRVSNRLKEQND--PVHRN-------ECNQLVLLVDDNFQYRSLRKRFFHL 94962


>PHYCAscaffold_5
          Length = 1593284

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 4       ICLVALIGLPAAGKSSLCSWLLGQQAALRVRHIVHLC 40
               + +VA+ GL   GKSS+ +WLL +Q+  RV   +  C
Sbjct: 1302423 VAVVAMAGLYRTGKSSMLNWLLDRQSGFRVGPTIERC 1302533


>PHYCAscaffold_42
          Length = 526029

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 56/235 (23%), Positives = 92/235 (39%), Gaps = 9/235 (3%)
 Frame = -3

Query: 1      MRRICLVALIGLPAAGKSSLCSWLLGQQAALRVRH---IVHLCYDDFLDATPSADLAYKE 57
              M+R  +V L G+P +GKS+     LG++  +  RH       C  DF   TP   +    
Sbjct: 413953 MKRPVVVILRGIPGSGKST-----LGREIEVICRHRGVAFTACSADFFFETPRGYVFDVS 413789

Query: 58     QRGRIF-KVIEKLISAIQEDTDWPPQVRRISSSGDYNSGRHLILCDDNFYYRSMRYKLYQ 116
              + G    K   +   A+  DT       R +  G   + +H++L D+    R   Y+ Y+
Sbjct: 413788 KLGAAHSKCKAEFARAVHGDTP------RKADGG--KATQHVVLVDNTSTQR-WEYETYE 413636

Query: 117    LCRDSGCIFGQIYMASSLDSCLQANSLRSDATRVPVDVVRQMNERLEVPDTSEA----WE 172
                  S      I      D+ +     + ++  VP D V  M  R E    + +    +E
Sbjct: 413635 HIATSSGSHVHIVEMRCEDAFMAYRMGQRNSHGVPPDKVVSMFMRWEEDPRAYSFTPQFE 413456

Query: 173    RNSLTLNGLDMDTTGSALLAFIASLLDLPAMETTL-DLPPAVARGLRQDQSLVHR 226
                 LT N L     G   L ++   LD  + +  L ++PP     L    +L +R
Sbjct: 413455 HTRLTQNPLSDGDVGG--LTYLGLFLDYDSQQKLLSEIPPIHWSQLADHVTLFYR 413297


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,784,827
Number of Sequences: 917
Number of extensions: 337823
Number of successful extensions: 1736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 821
length of query: 292
length of database: 21,341,249
effective HSP length: 104
effective length of query: 188
effective length of database: 21,245,881
effective search space: 3994225628
effective search space used: 3994225628
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)