TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22832596|gb|AAF48985.2| CG12788 [Drosophila melanogaster]
         (292 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241708|gb|AFNH01002311.1| Gregarina niphandrodes asmbl.305...    33   0.087
gi|338242890|gb|AFNH01001720.1| Gregarina niphandrodes asmbl.251...    31   0.43 
gi|338241247|gb|AFNH01002543.1| Gregarina niphandrodes asmbl.327...    30   0.96 
gi|338242311|gb|AFNH01002009.1| Gregarina niphandrodes asmbl.278...    29   2.1  
gi|338242652|gb|AFNH01001839.1| Gregarina niphandrodes asmbl.262...    28   2.8  
gi|338242419|gb|AFNH01001955.1| Gregarina niphandrodes asmbl.273...    28   4.8  
gi|338241245|gb|AFNH01002544.1| Gregarina niphandrodes asmbl.327...    27   8.1  

>gi|338241708|gb|AFNH01002311.1| Gregarina niphandrodes asmbl.3058,
            whole genome shotgun sequence
          Length = 31647

 Score = 33.5 bits (75), Expect = 0.087
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 3    RICLVALIGLPAAGKSSLCSWLLGQQAALRVRHIVHLCYDDFLDATPS 50
            RI +  + G  AAG S+  +  L Q A   VR +V  C + F   TPS
Sbjct: 4542 RIAVERITGFSAAGGSTWLTGCLLQHAGASVRQLVEFCVNTFTHVTPS 4685


>gi|338242890|gb|AFNH01001720.1| Gregarina niphandrodes asmbl.2518,
            whole genome shotgun sequence
          Length = 16753

 Score = 31.2 bits (69), Expect = 0.43
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = -1

Query: 158  MNERLEVPDTSEAWERNSLTLNGLDMDTTGSALLAFIASLLDLPAM--ETTLDLPPAVAR 215
            +  R++V D  E+W++ +  ++ + +DT GSA++ + AS  +   +  E+ +DL      
Sbjct: 6190 IQRRMKVLDPRESWQKLTPYVDAVCLDTLGSAVVKYKASACEAIGLPPESVVDLSSLTED 6011

Query: 216  GL 217
            GL
Sbjct: 6010 GL 6005


>gi|338241247|gb|AFNH01002543.1| Gregarina niphandrodes asmbl.3274,
            whole genome shotgun sequence
          Length = 11142

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 204  ETTLDLPPAVARGLRQDQSLVHRLDLLLRTRIGALLDGLR 243
            E  +DLP  +ARGL+   S +   DLL+R  +  L DG++
Sbjct: 3064 ELGVDLPAWLARGLQDGFSRLLPFDLLVRAYMAFLYDGVK 3183


>gi|338242311|gb|AFNH01002009.1| Gregarina niphandrodes asmbl.2783,
            whole genome shotgun sequence
          Length = 13032

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = -1

Query: 100  LCDDNFYYRSMRYKLYQLCRDSGCIFGQIYMASSLDSCLQANSLRSDATRVPVDVVRQM 158
            L +++ YY  ++YK   L         Q+Y +S L +   AN +R+++TRV   V+ ++
Sbjct: 8298 LSNESTYYSQLKYKCELLILH----LLQMYNSSMLANSTHANRMRANSTRVRTAVISKV 8134


>gi|338242652|gb|AFNH01001839.1| Gregarina niphandrodes asmbl.2628,
            whole genome shotgun sequence
          Length = 6153

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
 Frame = +3

Query: 59   RGRIFKVIEKLISAIQEDTDWPPQVRRISSSGDYNSGRHLILCDDNFY-------YRSMR 111
            R   F  I +LIS +   +DWP Q   + S G+ NS       D + Y           R
Sbjct: 4470 RPSCFVPISQLISMLDTTSDWPSQT-IVPSDGETNSKTRKERRDSSLYTF*RI*SLSHFR 4646

Query: 112  YKLYQLCRDSG 122
             KLY    D G
Sbjct: 4647 SKLYYFPHDGG 4679


>gi|338242419|gb|AFNH01001955.1| Gregarina niphandrodes asmbl.2733,
            whole genome shotgun sequence
          Length = 5033

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = -1

Query: 7    VALIGLPAAGKSSLCSWLLGQQAALRVRHIVHL-CYDDFLDATPSADLAYKEQRGRIFKV 65
            +ALIG P+ GKS+L   L G ++ +       L C    +D        Y+E R ++   
Sbjct: 4769 IALIGFPSVGKSTLLGQLTGAKSEVAAYEFTTLTCVPGIID--------YREARLQLLD- 4617

Query: 66   IEKLISAIQEDTDWPPQVRRISSSGD 91
            +  +I    E      QV  ++ S D
Sbjct: 4616 LPGIIEGASEGRGRGRQVIAVAKSAD 4539


>gi|338241245|gb|AFNH01002544.1| Gregarina niphandrodes asmbl.3275,
            whole genome shotgun sequence
          Length = 8050

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 15   AGKSSLCSWLLGQQAALRVRH 35
            + KS+LC WLL  QA L++ H
Sbjct: 5257 SAKSTLCIWLLIPQALLKLTH 5195


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,446,319
Number of Sequences: 3680
Number of extensions: 84035
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of query: 292
length of database: 5,120,956
effective HSP length: 94
effective length of query: 198
effective length of database: 4,775,036
effective search space: 945457128
effective search space used: 945457128
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)