TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22832596|gb|AAF48985.2| CG12788 [Drosophila melanogaster]
         (292 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig765  |  | 1 to 162644                                         34   0.13 
Cf_Contig1065  |  | 1 to 188513                                        32   0.48 
Cf_Contig1070  |  | 1 to 336028                                        30   2.4  
Cf_Contig1071  |  | 1 to 673414                                        29   4.1  
Cf_Contig1067  |  | 1 to 43923                                         29   5.3  
Cf_Contig1073  |  | 1 to 157601                                        28   6.9  
Cf_Contig1026  |  | 1 to 92129                                         28   6.9  

>Cf_Contig765  |  | 1 to 162644
          Length = 162644

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 26/140 (18%)
 Frame = +3

Query: 6     LVALIGLPAAGKSSLCSW--------------LLGQQAALRVRHIVHLCYDDFLDATPSA 51
             L+ L GLP AGKSS                  L G +   RV  ++ L  D  L +  S+
Sbjct: 55731 LILLTGLPGAGKSSFLQEAQHHVAAQPSQLFPLFGGRRCGRVAALLQL--DAVLQSLASS 55904

Query: 52    DLAYKEQRGRIF------KVIEKLISAIQEDT-DWPPQVRRISSSGDYNSGRH-----LI 99
               + +E    IF      + +E+L    + +      + R  S S D  + +      +I
Sbjct: 55905 PSSSREPEPPIFSPERWKQAVEELHRQTESELRTCLREARAHSCSRDAAASKSEAAIPVI 56084

Query: 100   LCDDNFYYRSMRYKLYQLCR 119
               +DN + RSMR + Y+LCR
Sbjct: 56085 FVEDNMHLRSMRERFYRLCR 56144


>Cf_Contig1065  |  | 1 to 188513
          Length = 188513

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
 Frame = -1

Query: 80     PPQVRRISSSGDYNSGRHLILCDDNFYYRSMRYKLYQLCR------DSGCIFGQIYMASS 133
              P Q+ + S +G  +    +I   D+F++R+ R  +  +CR      DS C      M+  
Sbjct: 164942 PAQMAKASITGSTDC---IISASDSFFHRTKRMMVGSVCRAQMPTLDSSCSVKSTLMSPF 164772

Query: 134    LDSCLQA---NSLRSDATRVPVDVVRQMNERLE 163
                 C  A   N  R++ +RV +  V +  ER E
Sbjct: 164771 KMICTPAWSLNFFRTEVSRVCLGAVTRATERAE 164673


>Cf_Contig1070  |  | 1 to 336028
          Length = 336028

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
 Frame = -2

Query: 2      RRICLVALIGLPAAGKSSL----CSWLLGQQAALRVRHIVHLCYDDFLDATPSADLAYKE 57
              +R+C   LIGL A+G +S+    C    G++ A + +          L AT  A  AYK 
Sbjct: 273009 KRVCFFFLIGLLASGSASMSTQPCQVRAGRETAHKTKRHATALPSITLQATALAH-AYKL 272833

Query: 58     QRG------RIFKVIEKLISAI 73
               R       R+ K +EK  +AI
Sbjct: 272832 WRSEESEGTRLIKKVEKTCAAI 272767


>Cf_Contig1071  |  | 1 to 673414
          Length = 673414

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 213    VARGLRQDQSLVHRLDLLLRTRIGALLDGLRQGEDKR 249
              V  G R    ++HR   LLR  +GA+LD ++Q   KR
Sbjct: 607172 VRSGSRDHADVLHRQSGLLRRLLGAVLDDVQQRRPKR 607062


>Cf_Contig1067  |  | 1 to 43923
          Length = 43923

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 25/93 (26%), Positives = 38/93 (40%)
 Frame = -1

Query: 130   MASSLDSCLQANSLRSDATRVPVDVVRQMNERLEVPDTSEAWERNSLTLNGLDMDTTGSA 189
             MA    SC   +  RSDA + P      +  R+  P  +   ER  +         T S 
Sbjct: 32739 MARLWRSCAYVS--RSDAVKAPPFFCTLLKNRILPPSVAALPERTMVAPCCAGWSCTASC 32566

Query: 190   LLAFIASLLDLPAMETTLDLPPAVARGLRQDQS 222
              + + ASL+ L + E+    PP V  G R+  +
Sbjct: 32565 GVTYEASLVRLASSESAGPPPPRVEYGGRRSDA 32467


>Cf_Contig1073  |  | 1 to 157601
          Length = 157601

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = +1

Query: 85     RISSSGDYNSGRHLILCDDN-----FYYRSMR---YKLYQLCRDSGCIFGQIYMASSLD 135
              RI   GD      L+L   +     F++   +   Y ++++C  S C+FG+ Y A+  D
Sbjct: 137575 RIKECGDLRYMHQLVLLSSSQHRYLFFHCCTKFCFYIIFRVCTKSSCVFGRQYHATDAD 137751


>Cf_Contig1026  |  | 1 to 92129
          Length = 92129

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -3

Query: 12    LPAAGKSSLCSWLLGQQAALRVRHIVHLCYDDFLD----ATPSADLAYKEQRGR 61
             LP  G +S  SW      A R   ++H   +DFL     A P+  L Y EQR R
Sbjct: 84507 LPEEGLASTTSWGTAATHASRSHALLHRFAEDFLAERL*ALPAWVLPYLEQRHR 84346


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,555,061
Number of Sequences: 1089
Number of extensions: 224904
Number of successful extensions: 1150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 430
length of query: 292
length of database: 12,349,441
effective HSP length: 100
effective length of query: 192
effective length of database: 12,240,541
effective search space: 2350183872
effective search space used: 2350183872
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)