TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22832596|gb|AAF48985.2| CG12788 [Drosophila melanogaster]
         (292 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325185597|emb|FR824131.1| Albugo laibachii Nc14, genomic cont...    31   0.92 
gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic cont...    30   1.6  
gi|325183585|emb|FR824089.1| Albugo laibachii Nc14, genomic cont...    28   6.0  
gi|325186148|emb|FR824145.1| Albugo laibachii Nc14, genomic cont...    28   7.8  

>gi|325185597|emb|FR824131.1| Albugo laibachii Nc14, genomic contig
            CONTIG_86_NC14_v4_88104_249
          Length = 88104

 Score = 31.2 bits (69), Expect = 0.92
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 4    ICLVALIGLPAAGKSSLCSWLLGQQAALRVRHIVHLC 40
            I +VA+ GL   GKSSL +WLL       V   +  C
Sbjct: 5448 IAIVAIAGLYRTGKSSLLNWLLSPSEIFPVASTIERC 5338


>gi|325179861|emb|FR824048.1| Albugo laibachii Nc14, genomic contig
              CONTIG_3_NC14_v4_366484_228
          Length = 366484

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 12/262 (4%)
 Frame = -2

Query: 30     ALRVRHIVHLCYDDFLDATPSADLAYKEQRGRIFKVIEKLISAIQEDTDWPPQVRRISSS 89
              A+  RH  H C ++ +      DL   E      ++IEKL +A+QED  +  ++    SS
Sbjct: 148605 AMAFRHFAH-CENEAIKK--ETDLVVHEL---FDEIIEKLYAALQEDEKYMAEIESAGSS 148444

Query: 90     -GDYNSGRHLILCDDNFYYRSMRYKLYQLCRDSGCIFGQIYMASSLDSCLQANSLRSDAT 148
                    GRH  L D      S+   + + C    C+F   YM + +     ++ L S   
Sbjct: 148443 RNSKKRGRHSKLLD---MEHSLVVSMTRFC----CLFK--YMNAHIHVTSDSSPLDSSPE 148291

Query: 149    RVPVDVVRQMNERLEVPDTSEAWERNSLTLNGL-----DMDTTGSALLAFIASLLDL--P 201
                 V++  ++++   V D  +   R S+ +  L     D+      L+    +LL L  P
Sbjct: 148290 TASVELGDRVDQ--VVRDLCKLLNRRSVQIVALEESMRDISCIKQVLMTLYLNLLWLSRP 148117

Query: 202    AMETTLDLPPAVARGLRQDQSLVHRLDLLLRTRIGALLDGLRQGEDKRLAGQTLNSRRKD 261
                +T   +           + L+ R+         AL+  L+   +K      ++    D
Sbjct: 148116 VFDTLSSMNEHQISATSNSEYLIQRIQHARTILEEALISVLQMHLEKNSLPTIVSPSGND 147937

Query: 262    ILTKFRT----EIGGKQIDGDV 279
              +     T    EI    +DGDV
Sbjct: 147936 VADSIDTLDPIEIA---MDGDV 147880


>gi|325183585|emb|FR824089.1| Albugo laibachii Nc14, genomic contig
             CONTIG_44_NC14_v4_128736_234
          Length = 128736

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 107   YRSMRYKLYQLCRDSGCIFGQIYMASSLDSCLQANSLRSDA 147
             +R    K  +  R  GC F +I   S+  SC+Q  S R DA
Sbjct: 18139 WRKAIAKASKYLRHQGCRFAKISHISAKHSCVQQRSCREDA 18017


>gi|325186148|emb|FR824145.1| Albugo laibachii Nc14, genomic contig
             CONTIG_100_NC14_v4_79208_353
          Length = 79208

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 64    KVIEKLISAIQEDTDWPPQVRRISSSGDYNS 94
             + + KLI  I+  + W PQ+RRI + G   S
Sbjct: 37660 ETLRKLIQVIRAISGWLPQIRRIVTQGSTKS 37568


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,518,878
Number of Sequences: 3816
Number of extensions: 156894
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 485
length of query: 292
length of database: 10,913,379
effective HSP length: 99
effective length of query: 193
effective length of database: 10,535,595
effective search space: 2033369835
effective search space used: 2033369835
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)