TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= scaffold_323 [translate(1)] (147 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso... 163 4e-41 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 29 1.1 gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromoso... 28 1.9 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 28 3.2 gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 27 5.4 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 27 5.4 >gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 163 bits (413), Expect = 4e-41 Identities = 86/190 (45%), Positives = 110/190 (57%), Gaps = 43/190 (22%) Frame = -1 Query: 1 LYLCVVVLLFIFIGESSSISITSPK-HSCHELGFTDSLLCSTCKDFAEFVGDSD------ 53 ++L + L I I + +S SCHELGFTD+LLCSTCKDFAEFVGDS Sbjct: 1140431 IFLLAAIFLCILINDCQGVSSPGTSASSCHELGFTDALLCSTCKDFAEFVGDSGK*FLKY 1140252 Query: 54 ------------------------------------LNNECAKCCAEESENIKKTYLSAT 77 +EC+ CC+EESE +KKTY S + Sbjct: 1140251 LSFFFFFFFFYLFFFIIFFFFFF*HFLTFFKKKKKAFGHECSICCSEESEKVKKTYQSVS 1140072 Query: 78 LIACKXRLGAFPHIKDFIDNKAKDYNKFKFTHEQGANPRLVLRDTEGKEEEISIDGWKSE 137 L+ C+ RLGA P IK+FI+NKAK Y+K +E GANPRL L D+EGK+E+I+I+ WK E Sbjct: 1140071 LVVCQ*RLGAHPQIKEFINNKAKLYSKLSVKYENGANPRLTLVDSEGKKEDINIESWKLE 1139892 Query: 138 NLEEFLIQNN 147 NLEE+L+QNN Sbjct: 1139891 NLEEYLVQNN 1139862 Score = 28.5 bits (62), Expect = 1.9 Identities = 10/30 (33%), Positives = 21/30 (70%) Frame = +2 Query: 117 LVLRDTEGKEEEISIDGWKSENLEEFLIQN 146 +++++ EG+EEE +I + + N+ +IQN Sbjct: 3992543 IIMKEEEGEEEEETITNYNNNNIMMIMIQN 3992632 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 29.3 bits (64), Expect = 1.1 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +3 Query: 16 SSSISITSPKHSCHE-----LGFTDSLLCSTCKDFAEFVGDSDLNNECAKCCA 63 S + S K C E F+DS++CS C DF D +C++C A Sbjct: 4174500 SEFCNFNSKKSICKESALISFNFSDSVVCSVCSDF-------DF*FDCSRCVA 4174637 >gi|93569058|gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 28.5 bits (62), Expect = 1.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -1 Query: 90 HIKDFIDNKAKDYNKFKFTHEQGAN 114 +I+DFI N DY K++ HE G N Sbjct: 1237770 NIRDFIFNHIIDYYKYESVHEVGGN 1237696 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 27.7 bits (60), Expect = 3.2 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -1 Query: 96 DNKAKDYNKFKFTHEQGANPRLVLRDTEGKEE 127 +N+ +YN +Q NP L +RD EG ++ Sbjct: 1837109 NNRGNNYNNNNQQQQQQQNPNLKIRDLEGYQD 1837014 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 26.9 bits (58), Expect = 5.4 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = -1 Query: 9 LFIFIGESSSISITSPKHSCHELGFTDSLLCSTCKDFAEFVGDSDLNNECAKC 61 L I ESS++S E G S ST K AEF+GD + ++ C Sbjct: 390092 LIELITESSNMS-----RKLEEYGTQKSSAISTAKKLAEFLGDDMIKDKGLSC 389949 Score = 26.6 bits (57), Expect = 7.1 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -3 Query: 1 LYLCVVVLLFIFIGESSSISITSPKHSCHELGFTDSLL 38 L +++ LF+FI SSS SI K +C L +L Sbjct: 1135188 LLFLLLLFLFLFIFLSSSFSILFSKQNCLNLSLIPQIL 1135075 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 26.9 bits (58), Expect = 5.4 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = -1 Query: 1 LYLCVVVLLFIFIGESSSISITSPKHSCHELGFTDSLLCSTCKDFAEFVGDSDL 54 L L +++LLF F SS S +S S S+LC+ F F ++ L Sbjct: 1053995 LLLLLLLLLFSFCSSSSPFSSSSSSSSSSSSSSLISILCNLLDFFLSFSSNNFL 1053834 Score = 26.2 bits (56), Expect = 9.3 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = -1 Query: 44 DFAEFVGDSDLNNECAKCCAEESENIKKTYLSATLIAC 81 DF+ V D+ +++E C + +I T L+ +I C Sbjct: 7547519 DFSILVDDNSVSDEEDAICKNKEPSISSTQLAGIIIGC 7547406 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,364,037 Number of Sequences: 6 Number of extensions: 90181 Number of successful extensions: 616 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 478 Number of HSP's gapped (non-prelim): 414 length of query: 147 length of database: 11,314,357 effective HSP length: 91 effective length of query: 56 effective length of database: 11,313,811 effective search space: 633573416 effective search space used: 633573416 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)