TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fep15_danio_rerio
         (138 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.                                                                     28   1.5  
T.congo.pschr4                                                         27   3.2  
TcIL3000_10_v2.embl                                                    25   9.4  
T.congo.pschr.6                                                        25   9.4  

>T.
          Length = 839999

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 63    ALYHNLEYDSGEDKNPR 79
             AL+H L  D GEDK+PR
Sbjct: 88233 ALWHGLHLDCGEDKSPR 88183



 Score = 25.4 bits (54), Expect = 9.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 67    NLEYDSGEDKNPRLIFYNDKDEEVKVVPVKKMKADEISSLLDSLGFYKRSEKGEEVPEEF 126
             +++  SG+++N      NDK  + +V  VKK K   +    DS      S+  E+  +EF
Sbjct: 95782 DVDMQSGDEENEEGSSANDKKSKRRVKVVKKSK--NVEDARDS------SQSDEDPADEF 95627

Query: 127   KHFP 130
                P
Sbjct: 95626 SESP 95615


>T.congo.pschr4
          Length = 1343510

 Score = 26.9 bits (58), Expect = 3.2
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -2

Query: 7     ALLALC-ATGRT-AENLSESTTDQDKLVIARGKLVAPSVVGXSIKKMPEL-----YNFLM 59
             +L  +C A+GR   EN S S+ D  KL            +   +KKM  L     Y+ ++
Sbjct: 18475 SLRRMCGASGRPWLENNSTSSCDDIKL---------DPEMENEMKKMHTLSEVGDYDAVL 18323

Query: 60    ERWALYHNLEYDSGEDKNPRLIFY 83
             E+W L H    +  ++K   ++FY
Sbjct: 18322 EQWNLLHQKYNEKDKEKGENVLFY 18251



 Score = 25.8 bits (55), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 57      FLMERWALYHNLEYDSGEDKN 77
               F  ERW L H+ EYDS   K+
Sbjct: 1338327 FF*ERWHLQHHSEYDSTNRKH 1338265



 Score = 25.8 bits (55), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 28     QDKLVIARGKLVAPSVVGXSIKKMPELYNFLMERWALYHN 67
              Q+K  +    + APS+ G  +  + E +  L ERW L HN
Sbjct: 275229 QEKSGVHEPSMCAPSLSG--VVHLGEEFASLRERWKLLHN 275116


>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 25.4 bits (54), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 77      NPRLIFYNDKDEEVKVVPVKKMKADEISS 105
               +P ++ YN++DEE+  VP       E+SS
Sbjct: 1474800 SPSMVSYNEEDEEMMSVPGGLRYGAELSS 1474886


>T.congo.pschr.6
          Length = 1233507

 Score = 25.4 bits (54), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 65     YHNLEYDSGEDKNPRLIFYNDKDEEVKVV 93
              Y  L  +  ED N RLIF+N+   ++K V
Sbjct: 745327 YEELTDEEREDYNHRLIFFNECKRKLKDV 745413



 Score = 25.4 bits (54), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 77     NPRLIFYNDKDEEVKVVPVKKMKADEISS 105
              +P ++ YN++DEE+  VP       E+SS
Sbjct: 151671 SPSMVSYNEEDEEMMSVPGGLRYGAELSS 151585


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,217,215
Number of Sequences: 11
Number of extensions: 34152
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 44
length of query: 138
length of database: 7,429,315
effective HSP length: 87
effective length of query: 51
effective length of database: 7,428,358
effective search space: 378846258
effective search space used: 378846258
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)