TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fep15_danio_rerio
         (138 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847432|gb|ADNL01003171.1| Astrammina rara contig03094, who...    22   7.0  
gi|330848595|gb|ADNL01002008.1| Astrammina rara contig02392, who...    22   7.0  
gi|330849062|gb|ADNL01001541.1| Astrammina rara contig01828, who...    22   7.0  
gi|330847394|gb|ADNL01003209.1| Astrammina rara contig02531, who...    21   9.1  
gi|330847545|gb|ADNL01003058.1| Astrammina rara contig01438, who...    21   9.1  
gi|330848450|gb|ADNL01002153.1| Astrammina rara contig02572, who...    21   9.1  
gi|330850311|gb|ADNL01000292.1| Astrammina rara contig00303, who...    21   9.1  
gi|330850327|gb|ADNL01000276.1| Astrammina rara contig00287, who...    21   9.1  

>gi|330847432|gb|ADNL01003171.1| Astrammina rara contig03094, whole
            genome shotgun sequence
          Length = 2350

 Score = 21.6 bits (44), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 16   RTAENLSESTTDQDKLVIARGKLVAP 41
            +TA+     T D+DK    R K++AP
Sbjct: 2153 KTADLKPLKTNDEDKTQEPRPKVIAP 2230


>gi|330848595|gb|ADNL01002008.1| Astrammina rara contig02392, whole
           genome shotgun sequence
          Length = 348

 Score = 21.6 bits (44), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 49  KKMPELYNFLMERW 62
           KK+PE+Y +L E +
Sbjct: 274 KKLPEVYKYLRETY 315


>gi|330849062|gb|ADNL01001541.1| Astrammina rara contig01828, whole
           genome shotgun sequence
          Length = 151

 Score = 21.6 bits (44), Expect = 7.0
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +1

Query: 55  YNFLMERWALYHNLEYDS 72
           Y FL++ W++  N+ Y++
Sbjct: 91  YEFLVDPWSIQRNVFYNT 144


>gi|330847394|gb|ADNL01003209.1| Astrammina rara contig02531, whole
            genome shotgun sequence
          Length = 11668

 Score = 21.2 bits (43), Expect = 9.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 72   SGEDKNPRLIFYNDKDEEV 90
            S EDKN  +  ++D+D+ V
Sbjct: 2286 SNEDKNRLVCIFDDRDKVV 2230


>gi|330847545|gb|ADNL01003058.1| Astrammina rara contig01438, whole
           genome shotgun sequence
          Length = 381

 Score = 21.2 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 2   WLTLVALLALCATGRTAE 19
           WL  VA+ +LC+  R A+
Sbjct: 306 WLMAVAMASLCSFTRAAK 359


>gi|330848450|gb|ADNL01002153.1| Astrammina rara contig02572, whole
           genome shotgun sequence
          Length = 388

 Score = 21.2 bits (43), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 105 SLLDSLGFYKRSEKGEEVPEEFK 127
           S+L   GFY+    GE+  ++FK
Sbjct: 313 SVLKLTGFYELGVFGEDESDDFK 245


>gi|330850311|gb|ADNL01000292.1| Astrammina rara contig00303, whole
            genome shotgun sequence
          Length = 7741

 Score = 21.2 bits (43), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 105  SLLDSLGFYKRSEKGEEVPEEFK 127
            S+L   GFY+    GE+  ++FK
Sbjct: 6324 SVLKITGFYELGVFGEDESDDFK 6256


>gi|330850327|gb|ADNL01000276.1| Astrammina rara contig00287, whole
            genome shotgun sequence
          Length = 1190

 Score = 21.2 bits (43), Expect = 9.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 59   MERWALYHNLE 69
            ME W LYH LE
Sbjct: 1122 MEDWPLYHLLE 1090


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,693
Number of Sequences: 3231
Number of extensions: 1980
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 138
length of database: 483,365
effective HSP length: 66
effective length of query: 72
effective length of database: 270,119
effective search space: 19448568
effective search space used: 19448568
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)