TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelL_ciona_intestinalis received from V.Shchedrina 
         (303 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181694|emb|FR824064.1| Albugo laibachii Nc14, genomic cont...    31   1.3  

>gi|325181694|emb|FR824064.1| Albugo laibachii Nc14, genomic contig
             CONTIG_19_NC14_v4_197315_238
          Length = 197315

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = -3

Query: 215   IYSALGLGRSVAKVYNCNALSLYGLAKATFEEIPKQYKDIHDDPQQLGGDFIVSLAEDNQ 274
             ++ +L LG      Y+ + + L+GL+   F +    +K+   D  +L  DF+ SL +D  
Sbjct: 12912 VFGSLTLGVVEVSWYSDDGI-LHGLSNVCFRDFTHLHKNHGRDFFRLE-DFLFSLKDDFD 12739

Query: 275   TKFSFIHRSVDSADRPKLTVLLD 297
                 F+ RSV   +RP L V LD
Sbjct: 12738 Q--GFVARSVLDCERPMLHVGLD 12676


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,841,834
Number of Sequences: 3816
Number of extensions: 125532
Number of successful extensions: 599
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 384
length of query: 303
length of database: 10,913,379
effective HSP length: 100
effective length of query: 203
effective length of database: 10,531,779
effective search space: 2137951137
effective search space used: 2137951137
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)