TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelL_ciona_intestinalis received from V.Shchedrina 
         (303 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced ...    42   4e-04
gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced ...    32   0.56 
gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ...    30   2.8  
gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ...    29   4.7  
gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ...    28   8.1  

>gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE01EUG8B-5, whole genome shotgun
              sequence
          Length = 941765

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
 Frame = +3

Query: 86     LLTFEEDWDKFLEEIDQSMFGEISTPTLAVGDK-------IPDDITLINARTKDAEAFDG 138
              L+   ED+ K +E I   +  +         +K       +P  +       +DA+   G
Sbjct: 368385 LMNITEDFKKMIEAIRSKILTQEQRNREKEKEKAREEAQQLPTHLAFAGINVQDAK---G 368555

Query: 139    NLL-FSS--NHRNCLVILLRHFAXLPXRKHVTEIQEKQDEFSQLKCSIILVSFGEEAGAD 195
              N++ FSS    + C++  LR F  L  R    ++   +     L  S+I + F E  G +
Sbjct: 368556 NIIPFSSLWEKKRCVIFCLRRFGCLICRLQAMDLSTIKPFLDMLGISLIGIGF-ENYGLE 368732

Query: 196    LWLKETKFSFPMYLDKQRKIYSALGLGR 223
               ++    F+  +Y+D  R +Y A+ LGR
Sbjct: 368733 DFIDGKFFAGDVYIDSSRSVYRAMKLGR 368816


>gi|328871378|gb|GL883013.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_ET2XIPL01CNAVH-3, whole genome shotgun sequence
          Length = 1908399

 Score = 32.0 bits (71), Expect = 0.56
 Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
 Frame = +1

Query: 5       LIDSINVFVQTGYNVKKKAENIMKDVGVKQFVETKLGSLLGLISA-YENLFCETKSCNRA 63
               L ++++   +   ++ K  +N+  D+G K+  +TKL  L   ++A  ++L  E+K     
Sbjct: 1017262 LKETVDSLKEDNLDLSKSVKNMQADIGSKESADTKLKQLNEKLTAEVKSLKEESKQKVTD 1017441

Query: 64      ALDKTLQVLYRQQSAGNEAVESLLTFEEDWDKFLEEIDQSM 104
               A ++  + + + Q+   E VE L       +   EE+++S+
Sbjct: 1017442 AKEQAKEKVKKDQAKHKEEVEKLNDHLSQLEGEKEELERSV 1017564


>gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun
               sequence
          Length = 4166812

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +1

Query: 179     LKCSIILVSFGEEAGADLWLKETKFSFPMYLDKQRKIYSALGLGRSVAKV-YNCNALSLY 237
               L+ SI  +S G    + L+ KETK+     +D+QR+I  A  L +S+ ++ YN   ++ +
Sbjct: 3039262 LRSSIGGISSGISKMSSLYSKETKYILTCDVDRQREINEAELLFQSMPELSYNVTKINQW 3039441

Query: 238     G 238
               G
Sbjct: 3039442 G 3039444


>gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence
          Length = 3408800

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 132     DAEAFDGNLLFSSNHRNCLVILLR 155
               D  +FD + LF+ +HRNC  I+LR
Sbjct: 3407379 DPTSFDHHCLFNIHHRNCQDIILR 3407308


>gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun
               sequence
          Length = 1770755

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = -1

Query: 203     FSFPMYLDKQRKIYSALGLGRSVAKVY---NCNALSLYGLAKATFEEIPKQYKDIHDDP- 258
               FS  + LDK R  Y  LGL + V +     +C +L+ +     +++ I   Y  I     
Sbjct: 1084487 FSETLMLDKNRWRYLLLGLSKRVYQFLTSKHCTSLT-FENGSTSWQHITNPYFPIKSPKV 1084311

Query: 259     ---QQLGGDFIVSLAEDNQTKFSFIHR 282
                  QQ  GD + +L   + T FS + +
Sbjct: 1084310 VRLQQSEGDRLCALPSPDTTVFSLVEK 1084230


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,341,409
Number of Sequences: 25
Number of extensions: 120610
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 147
length of query: 303
length of database: 10,339,736
effective HSP length: 100
effective length of query: 203
effective length of database: 10,337,236
effective search space: 2098458908
effective search space used: 2098458908
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)