TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelL_ciona_intestinalis received from V.Shchedrina 
         (303 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig958  |  | 1 to 53326                                          30   3.3  
Cf_Contig1055  |  | 1 to 461976                                        28   7.3  

>Cf_Contig958  |  | 1 to 53326
          Length = 53326

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -2

Query: 223   RSVAKVYNCNALSLYGLAKATFEEIPKQYKDIHDDPQQ 260
             R  AKV NCNA        AT E +    KD  DDP+Q
Sbjct: 44499 RFTAKVPNCNA--------ATLEHLLMDDKDFRDDPEQ 44410


>Cf_Contig1055  |  | 1 to 461976
          Length = 461976

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 223    RSVAKVYNCNALSLYGLAKATFEEIPKQYKDIHDDPQQ 260
              R  AKV NCNA        AT E +    KD  DDP++
Sbjct: 411717 RFTAKVPNCNA--------ATLEHLLMDDKDFRDDPEE 411806


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,264,573
Number of Sequences: 1089
Number of extensions: 125187
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 99
length of query: 303
length of database: 12,349,441
effective HSP length: 101
effective length of query: 202
effective length of database: 12,239,452
effective search space: 2472369304
effective search space used: 2472369304
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)