TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelL_ciona_intestinalis received from V.Shchedrina 
         (303 letters)

Database: F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_1                                                             30   7.0  
scaffold_12                                                            29   9.1  

>scaffold_1
          Length = 5926375

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 85      SLLTFEEDWDKFLEEIDQSMFGEISTPTLAVGDKIPDDITLINARTKDAEAFDGNLLFSS 144
               SLL+   + D      +  +  +++T T  + D   DD+ L+  R  D+   +GN+ F +
Sbjct: 4474831 SLLSLSSESDHITMREENDVGNDVTTTTSVLLDD--DDVLLLGGRGSDSNDTEGNIKFHN 4475004

Query: 145     N 145
               N
Sbjct: 4475005 N 4475007


>scaffold_12
          Length = 1636732

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 11/105 (10%)
 Frame = +3

Query: 95     KFLEEIDQSMFGEISTPTLAVGDKIPDDITLINARTKDA------EAFDGNLLFSSNHRN 148
              K L EI  +  G +    +   DK+ D   L   RTK A      +  D NL+    +R 
Sbjct: 675612 KLLVEIASNYVGSLVDSLV---DKLKD---LGQVRTKLAYHNNSGQTLDSNLMGGW*YRP 675773

Query: 149    -----CLVILLRHFAXLPXRKHVTEIQEKQDEFSQLKCSIILVSF 188
                   C+VI L +F  L  RK     +E Q+E  +++   +++SF
Sbjct: 675774 QLLAACIVISLINFMPLSIRKEAESSEEDQEEIKEVEE*SLVISF 675908


  Database: F.cylindrus/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,774,190
Number of Sequences: 271
Number of extensions: 302882
Number of successful extensions: 1282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 187
length of query: 303
length of database: 26,846,802
effective HSP length: 106
effective length of query: 197
effective length of database: 26,818,076
effective search space: 5283160972
effective search space used: 5283160972
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)