TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelL_ciona_intestinalis received from V.Shchedrina 
         (303 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_73                                                       35   0.17 
PHYCAscaffold_34                                                       31   2.5  
PHYCAscaffold_60                                                       29   7.3  

>PHYCAscaffold_73
          Length = 348431

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = -2

Query: 10     NVFVQTGYNVKKKAENIMKDVGVKQFVETKL-GSLLGLISAYENLFCETKSCNRAALDKT 68
              + FVQ   + K+  +N+M ++G+KQ +ET L   LL +++ Y     ET + N  A+ KT
Sbjct: 156169 DAFVQFWIHRKETPDNVMVELGLKQSMETLLENPLLNILTKY----TETYNIN-YAVKKT 156005

Query: 69     LQVLYRQQSAGNEAVESLLTFEEDWDKF-LEEIDQSMFGEISTPTLAVGDKIPDDITLIN 127
                V    ++ G+E V ++L      +KF  +EI +    +     L  G  + D   L+N
Sbjct: 156004 TVVETLTRAFGDETVATMLLAGR--EKFTTKEIAKQFQADQVEMWLNSGQSVDDVYKLLN 155831



 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -1

Query: 10     NVFVQTGYNVKKKAENIMKDVGVKQFVETKLGS-LLGLISAYENLFCETKSCNRAALDKT 68
              + FVQ   + K+  +N+M ++G+KQ  +T L S LL +++ Y   +    +  +  + +T
Sbjct: 222446 DAFVQFWIHRKETPDNVMVELGLKQSTKTLLESPLLNILTKYTEAYNVNFATKKTTVIET 222267

Query: 69     L 69
              L
Sbjct: 222266 L 222264


>PHYCAscaffold_34
          Length = 622686

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
 Frame = +1

Query: 13     VQTGYNVKKKAENIMKDVGVKQFVETKLGS------LLGLISAYENLFCETKSCNRAALD 66
              V+  Y V  K  +I+K    K+ V TK G+      L+  +    NLF  ++SC R A  
Sbjct: 292111 VRNEYIVDPKTSDIVK----KRVVVTKGGAFPEGSTLIRKLRTLNNLFSSSRSCERIARL 292278

Query: 67     KTLQVLYR 74
              K +Q+ +R
Sbjct: 292279 KQVQIFHR 292302


>PHYCAscaffold_60
          Length = 366873

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = -1

Query: 169    IQEKQDEFSQLKCSIILVSFGEEAGADLWLKETKFSFPMYLDKQRKIY 216
              + ++QDE  +L       +F +  G  ++  ++ +SF +Y+DK+R++Y
Sbjct: 308124 LPDQQDELCELLFEFYRKNFRKPEGEFIF-PDSDYSFDVYVDKRRRVY 307984


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,378,771
Number of Sequences: 917
Number of extensions: 228592
Number of successful extensions: 925
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 350
length of query: 303
length of database: 21,341,249
effective HSP length: 104
effective length of query: 199
effective length of database: 21,245,881
effective search space: 4227930319
effective search space used: 4227930319
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)