TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelL_Molgula_tectiformis received from V.Shchedrina (296 letters) Database: D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso... 43 3e-04 gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromoso... 30 2.2 gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso... 29 3.8 gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos... 28 6.5 >gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence Length = 5450249 Score = 43.1 bits (100), Expect = 3e-04 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 8/137 (5%) Frame = +1 Query: 60 NTKTLVEL-NKMMQLYYKNDETQIEVDEFLEFQKSLDEFFESIDKSIAAQTAPDVKLCEG 118 NT+ L +L + + +YY ND E ++ + F+ + KSI +Q P +KL Sbjct: 1245610 NTELLSDLLDNLDAIYYCNDSGSNEDEKNKNCKLHTYFLFQILSKSIFSQQLPSIKLIHS 1245789 Query: 119 STFPSFNL---VHVQSESHVAFPQNSSHKYKLLIVLRHFAXLPXRLHVLEVNKNKRKF-- 173 +FNL ++ +++S++ + N L + LR F + + + +K KF Sbjct: 1245790 RYKTNFNLFPCINSKNQSNLIYQSNLESFAILSLTLRSFKIFEYLVFKISIKFDKNKFNP 1245969 Query: 174 --KDKECEILLVSFGPL 188 KDK +I L S + Sbjct: 1245970 LKKDKSLQIYLDSLSKI 1246020 Score = 28.1 bits (61), Expect = 8.5 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Frame = +2 Query: 31 KGKELEFVEKKIGMLF---GLMGAYRDLFHNTNTKTLVELNKMMQLYYKNDETQIEVDEF 87 +G EL+ +++K+G F L Y DL + N+K +NK + D +I + Sbjct: 399461 RGHELDNLDEKVGGFFKSLDLKRLYTDLNNEENSK---HINKYADGNFSKDFNEISQEFE 399631 Query: 88 LEFQKSLDEFFESIDKSIAAQTAPDVKLCEGSTFPSFNLVHVQSESHVAFPQN---SSHK 144 +F+K + E +K + KL E + V H+ P + S H Sbjct: 399632 KKFKKEVISVQEQFNKRDSDFIRKKTKLEEKNKCLIEMGERVLENGHLYNPNSLNESVHY 399811 Query: 145 YKLLIVL 151 Y+ LI L Sbjct: 399812 YQRLIEL 399832 >gi|93569092|gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 30.0 bits (66), Expect = 2.2 Identities = 20/63 (31%), Positives = 27/63 (42%) Frame = -3 Query: 87 FLEFQKSLDEFFESIDKSIAAQTAPDVKLCEGSTFPSFNLVHVQSESHVAFPQNSSHKYK 146 F F SL F S S + P ST P+F+ V +H P NSS+ Y+ Sbjct: 5264172 FCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYE 5263993 Query: 147 LLI 149 +I Sbjct: 5263992 NII 5263984 Score = 29.3 bits (64), Expect = 3.8 Identities = 20/63 (31%), Positives = 27/63 (42%) Frame = -2 Query: 87 FLEFQKSLDEFFESIDKSIAAQTAPDVKLCEGSTFPSFNLVHVQSESHVAFPQNSSHKYK 146 F F SL F S S + P ST P+F+ V +H P NSS+ Y+ Sbjct: 5274940 FCAFLGSLSSFHTSSQHSTKNEILPLDIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYE 5274761 Query: 147 LLI 149 +I Sbjct: 5274760 NII 5274752 >gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole genome shotgun sequence Length = 5125352 Score = 29.3 bits (64), Expect = 3.8 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 12/79 (15%) Frame = -1 Query: 52 YRDLFHNTNTKTLVELNKMMQLYYKNDE---------TQIEVDEFLEFQKSLDEFFESI- 101 YRDLF + + E++K +QL NDE + +D F + K+ + FE I Sbjct: 877580 YRDLFEEELLEIVFEVHKNIQLGLLNDEDYSPPPEIIKKPGLDIFGQLTKNQTDTFECIK 877401 Query: 102 --DKSIAAQTAPDVKLCEG 118 I+++ AP ++ C G Sbjct: 877400 CNGSVISSRYAPHLEKCMG 877344 Score = 28.5 bits (62), Expect = 6.5 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 268 NNKWILSYLYRSKTSADRPTLDQLLQHL 295 N++W+++Y + + P QLLQHL Sbjct: 4629037 NHQWVVTYYHHQQHQYQHPIFYQLLQHL 4628954 Score = 28.5 bits (62), Expect = 6.5 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +3 Query: 127 VHVQSESHVAFPQNSSHKYKLLIVLRHFAXLPXRLHVLEVNKNKRKFKDKECEILLVSF 185 +H H+ QN +KL +VL L L VLE NK + FK IL++SF Sbjct: 3696597 LHSMPMYHMLLVQNVQKHFKL*LVLLKMNIL---LEVLENNK*NKYFKLNHWLILVISF 3696764 >gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 28.5 bits (62), Expect = 6.5 Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 13/149 (8%) Frame = +3 Query: 32 GKELEFVEKKIGMLFGLMGAYRDLFHNTNTKTLVELN-KMMQL---YYKNDETQIEVDEF 87 GK +F++ K + Y L N + K +V+L+ K++ L +Y ND T I++ + Sbjct: 2046219 GKSYQFIKLK-----NHIDDYGFLILNESNKPVVQLDSKLISLIIKHYVNDLT-IDIKDK 2046380 Query: 88 LEFQKSLD-EFFESIDKSIA--------AQTAPDVKLCEGSTFPSFNLVHVQSESHVAFP 138 ++ ++ EFF+ + ++ ++ P V + + ++L+ F Sbjct: 2046381 IDILGTVSREFFKLLSIELSNLKTICHFIRSKPLVNEYDTTQLSDYSLIKSIPN---CFS 2046551 Query: 139 QNSSHKYKLLIVLRHFAXLPXRLHVLEVN 167 +S HK+ L+ +L + L +++ LE+N Sbjct: 2046552 MDSIHKFPLVFILSNHNKLFNQVNTLEIN 2046638 Database: D.discoideum_AX4/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.319 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,241,207 Number of Sequences: 6 Number of extensions: 155988 Number of successful extensions: 871 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 663 Number of HSP's gapped (non-prelim): 404 length of query: 296 length of database: 11,314,357 effective HSP length: 100 effective length of query: 196 effective length of database: 11,313,757 effective search space: 2217496372 effective search space used: 2217496372 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)