TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelL_ciona_intestinalis received from V.Shchedrina 
         (303 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847779|gb|ADNL01002824.1| Astrammina rara contig00179, who...    28   0.16 
gi|330850106|gb|ADNL01000497.1| Astrammina rara contig00556, who...    24   3.1  
gi|330850035|gb|ADNL01000568.1| Astrammina rara contig00633, who...    23   5.3  

>gi|330847779|gb|ADNL01002824.1| Astrammina rara contig00179, whole
            genome shotgun sequence
          Length = 9026

 Score = 28.5 bits (62), Expect = 0.16
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +2

Query: 248  PKQYKDIHDDP-----QQLGGDFIVSLAEDNQTKFSFI 280
            P Q  D HDDP      QL GD ++ + E+ + +  FI
Sbjct: 7094 PNQRTDFHDDPVEEFFYQLKGDMVLKVIEEGEHRDVFI 7207


>gi|330850106|gb|ADNL01000497.1| Astrammina rara contig00556, whole
           genome shotgun sequence
          Length = 558

 Score = 24.3 bits (51), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 149 CLVILLRHFAXLPXRKHVTEIQEKQDEFSQLKCSII 184
           C+VI L      P R+ V   + K+D  S++K   I
Sbjct: 382 CVVIRLNSKRNKPGRQSVLAFERKEDSASRVKAQSI 275


>gi|330850035|gb|ADNL01000568.1| Astrammina rara contig00633, whole
           genome shotgun sequence
          Length = 592

 Score = 23.5 bits (49), Expect = 5.3
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 213 RKIYSALGLGRSVAK-VYNCNALSLYGLAKATFEEIPKQYKDIHDDPQQLGGDF 265
           +K+  A     +  K V+N     L+G        I   +K I DDPQ+   DF
Sbjct: 197 QKVMDAFNTATTALKIVFN----DLFGFISDNIGPITTYFKKIFDDPQKALKDF 346


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,072
Number of Sequences: 3231
Number of extensions: 4701
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 303
length of database: 483,365
effective HSP length: 74
effective length of query: 229
effective length of database: 244,271
effective search space: 55938059
effective search space used: 55938059
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)