TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aureococcus anophagefferens
         (108 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.693 of Sphaeroforma arctica JP610                           29   1.8  
supercont1.948 of Sphaeroforma arctica JP610                           29   2.3  
supercont1.311 of Sphaeroforma arctica JP610                           28   3.0  
supercont1.1194 of Sphaeroforma arctica JP610                          28   5.1  
supercont1.119 of Sphaeroforma arctica JP610                           27   6.7  
supercont1.278 of Sphaeroforma arctica JP610                           27   8.7  

>supercont1.693 of Sphaeroforma arctica JP610
          Length = 49798

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 24    HLETLLTDCLQCCIKEEEFKHE 45
             H  T +  C+QCC++E+ F H+
Sbjct: 11589 HTHTPIHTCMQCCLQEKPFHHK 11524


>supercont1.948 of Sphaeroforma arctica JP610
          Length = 29395

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -3

Query: 25    LETLLTDCLQCCIKEEEFKHEK---YPTAILEVCEC 57
             L+TL  +C  C    EE K      Y TAIL VC C
Sbjct: 21260 LQTLARECTPCQSSGEESKRRPCIHYDTAIL*VCNC 21153


>supercont1.311 of Sphaeroforma arctica JP610
          Length = 90105

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 32    CLQCCIKEEEFKHEKYPTAILEVCECNLARFPQVQA 67
             C  CCI +E  K EKY         CNL++F +V A
Sbjct: 69015 CTTCCITDELMKAEKY--------LCNLSQFVKVVA 69098


>supercont1.1194 of Sphaeroforma arctica JP610
          Length = 19969

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +1

Query: 6     GFNPETLKCGLCERLSDYHLETLLTDCLQCCIKEEEF---KHEKYPTAILEVCECNLARF 62
             G NP+TL  GLC +    +  TL T C    +K   F   +H+  P +      C  A F
Sbjct: 15763 GVNPKTLGTGLCLQG*RANPRTLSTTCACALLKRSHF*DYEHDFQPASYTRC*FCIKASF 15942


>supercont1.119 of Sphaeroforma arctica JP610
          Length = 147285

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 22   DYHLETLLTDCLQCCI----KEEEFKHEKYPTAILEVCECN 58
            DY+ +T+ T C  CCI    + E+F   KY   I E+CE N
Sbjct: 2721 DYNKKTVDTYCDGCCICLFDQYEDF*SHKY--LIQEICEGN 2605


>supercont1.278 of Sphaeroforma arctica JP610
          Length = 96050

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 12   LKCGLCERLSDYHLETLLTDCLQCCIKEEEFKHEKYPTAILEVCEC 57
            L CG+C     YH   + +DCL C  + +  K+ K   +     EC
Sbjct: 5189 LPCGVCTDDVSYHC--IESDCLLCAFRYQVHKYSKAYGSGCTAVEC 5320


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.324    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,551,097
Number of Sequences: 15618
Number of extensions: 295909
Number of successful extensions: 1905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1905
length of query: 108
length of database: 40,529,447
effective HSP length: 82
effective length of query: 26
effective length of database: 39,248,771
effective search space: 1020468046
effective search space used: 1020468046
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)