TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= scaffold_323 [translate(1)] (147 letters) Database: D.fasciculatum/genome.fa 25 sequences; 31,019,208 total letters Searching.........................done Score E Sequences producing significant alignments: (bits) Value gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced ... 108 2e-33 gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ... 29 1.3 gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ... 29 1.3 gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced ... 28 2.3 gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced ... 28 2.3 gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced ... 28 2.3 gi|328866373|gb|GL883027.1| Dictyostelium fasciculatum unplaced ... 27 5.1 gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced ... 27 6.6 gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced ... 27 6.6 >gi|328866594|gb|GL883026.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EU5ZYIE02H8LDV-5, whole genome shotgun sequence Length = 1919465 Score = 108 bits (271), Expect(2) = 2e-33 Identities = 54/116 (46%), Positives = 70/116 (60%), Gaps = 22/116 (18%) Frame = -3 Query: 54 LNNECAKCCAEESENIK----------------------KTYLSATLIACKXRLGAFPHI 91 L EC CCA+E++ K KTY+ A L C+ R+GAFPHI Sbjct: 177225 LVEECKNCCAQEAKTEKVRHSLSLYFLFIY*YF*FDLI*KTYVKAILYICR*RMGAFPHI 177046 Query: 92 KDFIDNKAKDYNKFKFTHEQGANPRLVLRDTEGKEEEISIDGWKSENLEEFLIQNN 147 K+F+D KA++Y KF+ HE GANPRL L D+EG E I+I+ WK+E+LEEFL NN Sbjct: 177045 KEFVDKKAREYTKFEHQHEPGANPRLELHDSEGATETINIESWKTEHLEEFLRDNN 176878 Score = 49.7 bits (117), Expect(2) = 2e-33 Identities = 21/36 (58%), Positives = 27/36 (75%) Frame = -1 Query: 25 KHSCHELGFTDSLLCSTCKDFAEFVGDSDLNNECAK 60 K +CH+LGFTDSLLCS+C DF EFV D + + +K Sbjct: 177407 KLNCHDLGFTDSLLCSSCTDFEEFVADPSMYTK*SK 177300 Score = 26.9 bits (58), Expect = 5.1 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -2 Query: 120 RDTEGKEEEISIDGWKSENL 139 R E ++EEI+IDGWK N+ Sbjct: 649024 RRWEWRKEEITIDGWKRWNI 648965 >gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence Length = 3408800 Score = 28.9 bits (63), Expect = 1.3 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 3 LCVVVLLFIFIGESSSISITSPKHSCH 29 LC +++ I I E I IT+ KH+CH Sbjct: 667908 LCSYIIIIIIIME*IGIIITNSKHACH 667988 >gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence Length = 2750715 Score = 28.9 bits (63), Expect = 1.3 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = -2 Query: 13 IGESSSISITSPKHSCHELGFTD--SLLCSTCKDFAEFVGDSDLNNECAKCC 62 + + +S + +C LG D SL ++C F G D NN C CC Sbjct: 573380 LDDKNSAQNVLSRAACSGLGCRDVTSLPGNSCHAFTCGAGGKDCNNSCCCCC 573225 >gi|328868227|gb|GL883021.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence Length = 3468650 Score = 28.1 bits (61), Expect = 2.3 Identities = 20/91 (21%), Positives = 38/91 (41%) Frame = -1 Query: 20 SITSPKHSCHELGFTDSLLCSTCKDFAEFVGDSDLNNECAKCCAEESENIKKTYLSATLI 79 +IT+ + C+++ T KDF + V D + N KC ++ + + + Sbjct: 1966580 NITAQQSKCYDI--------YTGKDFIKVVTDVTVRNNLYKCSQGRKKDCVQLEIKEFSL 1966425 Query: 80 ACKXRLGAFPHIKDFIDNKAKDYNKFKFTHE 110 + +I F DYN+F FT++ Sbjct: 1966424 DSLKHYDTYKNIAGF-----SDYNEFVFTNK 1966347 >gi|328870595|gb|GL883016.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-143d02.r1-5, whole genome shotgun sequence Length = 656888 Score = 28.1 bits (61), Expect = 2.3 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 1 LYLCVVVLLFIFIGESSSISITSPKH 26 LY VV LF+FI SS+ S +SP H Sbjct: 630771 LYFLHVVGLFLFISSSSTKSFSSPYH 630694 >gi|328875389|gb|GL883007.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-p-12c09.r1-3, whole genome shotgun sequence Length = 1770755 Score = 28.1 bits (61), Expect = 2.3 Identities = 20/91 (21%), Positives = 38/91 (41%) Frame = +3 Query: 20 SITSPKHSCHELGFTDSLLCSTCKDFAEFVGDSDLNNECAKCCAEESENIKKTYLSATLI 79 +IT+ + C+++ T KDF + V D + N KC ++ + + + Sbjct: 463635 NITAQQSKCYDI--------YTGKDFIKVVTDVTVRNNLYKCSQGRKKDCVQLEIKEFSL 463790 Query: 80 ACKXRLGAFPHIKDFIDNKAKDYNKFKFTHE 110 + +I F DYN+F FT++ Sbjct: 463791 DSLKHYDTYKNIAGF-----SDYNEFVFTNK 463868 Score = 27.7 bits (60), Expect = 3.0 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = -3 Query: 91 IKDFIDNKAKDYNKFKFTHEQGANPRLVLRDTEGKEEEISIDGWKSEN 138 I D I+ D++K K TH++ + + V + ++ SI G+K ++ Sbjct: 285357 INDIINKGYDDWSKSKHTHQKVTSNKFVESSSSSSLDQGSIGGYKCQH 285214 >gi|328866373|gb|GL883027.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_EUAJFUG01CK1KI-5, whole genome shotgun sequence Length = 542435 Score = 26.9 bits (58), Expect = 5.1 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 Query: 89 PHIKDFIDNKAKDYNKFKFTHEQGANPRLVLRDTEGKEEEISIDGWKSEN 138 PH KD+I +K KD++ N RD E K+ I I KSEN Sbjct: 530763 PHYKDYIKDKTKDFSN---------NNNNRFRDRE-KDLRILISFLKSEN 530644 >gi|328872098|gb|GL883010.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-F-a-25c12.r2-5, whole genome shotgun sequence Length = 4166812 Score = 26.6 bits (57), Expect = 6.6 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +2 Query: 41 TCKDFAEFVGDSDLNNECAKCCAEESENIKKTYLSATL 78 +CK+ FVG L+ CC + N K LS +L Sbjct: 738863 SCKENTHFVGILLLDQNSNNCCTHQ*HNTHKQSLSLSL 738976 Score = 26.6 bits (57), Expect = 6.6 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = -3 Query: 1 LYLCVVVLLFIFIGESSSISITSPKHSCHELGFTDSLLCSTC 42 L+ VVV FIG S+SIS +S SC + S STC Sbjct: 2979365 LFDLVVVSFCFFIGCSTSISSSSISSSCSSISSISS--SSTC 2979246 Score = 26.6 bits (57), Expect = 6.6 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 95 IDNKAKDYNKFKFTHEQ--GANPRLVLRDTEGKEEEISIDGWKSENLEEF 142 IDN +KF + +Q G L+L ++ +I+IDG K +N +F Sbjct: 1432930 IDNLYYSISKFNYQQQQQQGKEDSLLLLPLNLRKLKINIDGIKDQNNSKF 1433079 >gi|328876102|gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun sequence Length = 2485436 Score = 26.6 bits (57), Expect = 6.6 Identities = 12/37 (32%), Positives = 14/37 (37%) Frame = -2 Query: 25 KHSCHELGFTDSLLCSTCKDFAEFVGDSDLNNECAKC 61 KH F DS +CS C + D C KC Sbjct: 228832 KHDWSRERFNDSPICSGCNNSIVSAKDKSSGYNCTKC 228722 Database: D.fasciculatum/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,019,208 Number of sequences in database: 25 Lambda K H 0.319 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,333,679 Number of Sequences: 25 Number of extensions: 99792 Number of successful extensions: 586 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 480 Number of HSP's gapped (non-prelim): 316 length of query: 147 length of database: 10,339,736 effective HSP length: 90 effective length of query: 57 effective length of database: 10,337,486 effective search space: 589236702 effective search space used: 589236702 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (26.2 bits)