TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Aureococcus anophagefferens
         (108 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847384|gb|ADNL01003219.1| Astrammina rara contig02818, who...    23   1.2  
gi|330847623|gb|ADNL01002980.1| Astrammina rara contig00483, who...    21   5.9  
gi|330847641|gb|ADNL01002962.1| Astrammina rara contig00085, who...    21   7.7  
gi|330847920|gb|ADNL01002683.1| Astrammina rara contig03169, who...    21   7.7  
gi|330848905|gb|ADNL01001698.1| Astrammina rara contig02016, who...    21   7.7  
gi|330849104|gb|ADNL01001499.1| Astrammina rara contig01779, who...    21   7.7  
gi|330850265|gb|ADNL01000338.1| Astrammina rara contig00359, who...    21   7.7  

>gi|330847384|gb|ADNL01003219.1| Astrammina rara contig02818, whole
            genome shotgun sequence
          Length = 2919

 Score = 23.5 bits (49), Expect = 1.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 66   QAFVHKDMARQFPQV 80
            + +  KDMAR+FPQV
Sbjct: 2211 KTYKFKDMARKFPQV 2255


>gi|330847623|gb|ADNL01002980.1| Astrammina rara contig00483, whole
            genome shotgun sequence
          Length = 1901

 Score = 21.2 bits (43), Expect = 5.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 32   CLQCCIKEEE 41
            C  CC+KEE+
Sbjct: 1879 CRSCCLKEEK 1850



 Score = 21.2 bits (43), Expect = 5.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 32   CLQCCIKEEE 41
            C  CC+KEE+
Sbjct: 1747 CRSCCLKEEK 1718


>gi|330847641|gb|ADNL01002962.1| Astrammina rara contig00085, whole
            genome shotgun sequence
          Length = 7701

 Score = 20.8 bits (42), Expect = 7.7
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -1

Query: 10   ETLKCGLCERLSDYHLETLLTDCLQCCIKEEEF 42
            +++  G  +R++  H     T CL+C   E  +
Sbjct: 7272 DSIGYGYSQRVNSQH*RQTNTKCLKCQYTENRY 7174


>gi|330847920|gb|ADNL01002683.1| Astrammina rara contig03169, whole
            genome shotgun sequence
          Length = 2571

 Score = 20.8 bits (42), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 2    CKAAGFNPETLKCGL 16
            CKA G +  TL CG+
Sbjct: 1710 CKAIGRSGSTLWCGI 1754


>gi|330848905|gb|ADNL01001698.1| Astrammina rara contig02016, whole
           genome shotgun sequence
          Length = 315

 Score = 20.8 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 52  LEVCECNLARFPQVQAF 68
           + V +CN  R PQV +F
Sbjct: 171 INVKKCNNKRVPQVNSF 221


>gi|330849104|gb|ADNL01001499.1| Astrammina rara contig01779,
          whole genome shotgun sequence
          Length = 205

 Score = 20.8 bits (42), Expect = 7.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 47 YPTAILEVCECNLAR 61
          YP+ +L+V  CN+ +
Sbjct: 77 YPSTLLDVVICNITK 121


>gi|330850265|gb|ADNL01000338.1| Astrammina rara contig00359, whole
           genome shotgun sequence
          Length = 545

 Score = 20.8 bits (42), Expect = 7.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 16  LCERLSDYHLETLLTDCLQCCIKEEEFK 43
           +C+  SDY +  L    + C +   +FK
Sbjct: 388 VCDLSSDYAMRVLHDPIIGCALSIVQFK 471


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.324    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,182
Number of Sequences: 3231
Number of extensions: 2962
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 108
length of database: 483,365
effective HSP length: 63
effective length of query: 45
effective length of database: 279,812
effective search space: 12591540
effective search space used: 12591540
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 41 (20.4 bits)