#!/bin/bash

cami=/homes/users/U56834/Treball/ ;

mkdir $cami/genomesindexats;
cd $cami/genomesindexats;
for genome in A.laibachii_Nc14 C.fasciculata D.fasciculatum G.niphandrodes L.donovani_BPK282A1 P.capsici T.congolense A.rara D.discoideum_AX4 F.cylindrus I.multifiliis_strain_G5 L.tarentolae P.polycephalum S.arctica ; do {
    fastaindex /cursos/BI/genomes/protists/2012/$genome/genome.fa $genome.index ;
  } done