TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo
sapiens # Complete
         (115 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    39   7e-04
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   0.32 

>gb|CM000619.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 17, whole genome
             shotgun sequence
          Length = 703943

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -3

Query: 62    TGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRA 96
             TGAFE+ +N + +FSKL  G FP   DLI ++ +A
Sbjct: 86394 TGAFEVYLNDKEIFSKLSKGAFPTADDLISSLVQA 86290


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun
              sequence
          Length = 976485

 Score = 29.6 bits (65), Expect = 0.32
 Identities = 24/81 (29%), Positives = 39/81 (48%)
 Frame = -1

Query: 27     VEYCEPCGFEATYLELASAVKEQYPGIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYE 86
              VEYCE CG+  T LE A+ +  +     I +  GG     ++  G++V  + +     YE
Sbjct: 250533 VEYCESCGWAVTALEEANLIVAR-GTFTIHNGGGG-----VDGTGEVVHKRDDTQ--RYE 250378

Query: 87     KDLIEAIRRASNGETLEKITN 107
              K L E + +A+       +TN
Sbjct: 250377 KRLAEVLEQAAARRLPMLVTN 250315


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.314    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,774,575
Number of Sequences: 31
Number of extensions: 27658
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 11
length of query: 115
length of database: 7,911,228
effective HSP length: 84
effective length of query: 31
effective length of database: 7,908,624
effective search space: 245167344
effective search space used: 245167344
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)