TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Artemia franciscana SelW2
         (93 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    44   1e-05
gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    40   3e-04
gb|GL349470.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   1.6  
gb|GL349479.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   3.5  
gb|GL349451.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   4.6  
gb|GL349484.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   6.0  
gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   6.0  
gb|GL349499.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   7.8  
gb|GL349467.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    25   7.8  

>gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.61,
             whole genome shotgun sequence
          Length = 239416

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = -2

Query: 4     IHVEYCGAXGYAPRYQELAAKIRKAAPDAEVSGNV---GRRSSFEVT 47
             IH+EYC + GY+ RY+++A  I  A PD  V GN     RR +FE+T
Sbjct: 26118 IHIEYCTS*GYSGRYRQVARAITTAFPDVVVRGNELARPRRGAFEIT 25978


>gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.1,
              whole genome shotgun sequence
          Length = 716227

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = -3

Query: 13     GYAPRYQELAAKIRKA-APDAEVSGNVG---RRSSFEVTVN-GELIHSKLSTNGFPDFDE 67
              GY  RY+   + I+KA   D EV+GN     R  +FEVT + G +  SKLS  GFP  DE
Sbjct: 166310 GYFSRYRRAVSWIQKAFGSDVEVAGNPEGSPRSGAFEVTDDAGTVYWSKLSGQGFPTEDE 166131

Query: 68     VV 69
              +V
Sbjct: 166130 LV 166125


>gb|GL349470.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.38,
             whole genome shotgun sequence
          Length = 356648

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 4     IHVEYCGAXGYAPRYQELAAKIRKAAPDAEVSG 36
             + V +C + GYA  ++ L   +  AAP  EV G
Sbjct: 53645 VFVAFCQS*GYANHFRALRQALASAAPGVEVIG 53743


>gb|GL349479.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.47,
              whole genome shotgun sequence
          Length = 307816

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 15     APRYQELAAKIRKAAPDAEVSGNVGRRSS 43
              APR +  AA +R +A  A  SG   RRSS
Sbjct: 284091 APRGRASAATLRSSATAAAPSGTTSRRSS 284005


>gb|GL349451.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.19,
              whole genome shotgun sequence
          Length = 517691

 Score = 25.8 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 52     LIHSKLSTNGFPDFDEVVEIVISVTKGDKPRTVEK 86
              +++  L T+  P +DE+VE +  V K D   TVE+
Sbjct: 358447 VVYEPLLTSSRPQYDEMVESMGLVAKLDVELTVEE 358343


>gb|GL349484.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.52,
              whole genome shotgun sequence
          Length = 300266

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -1

Query: 9      CGAXGYAPRYQELAAKIRKAAPDAEVSG----NVGRRSSFEVTVNGEL 52
              CG  G APR ++ A K    A  A  +      VG RSS  V   G L
Sbjct: 199568 CGESGSAPRPEQAAPKAPGLAASASTTSRSGLTVGSRSSSPVRRIGHL 199425


>gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.5,
              whole genome shotgun sequence
          Length = 654703

 Score = 25.4 bits (54), Expect = 6.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 24     KIRKAAPDAEVSGNVGRRSSFEVTVNGELIHSKLS 58
              + R A       G+VGR SS   T NGE + + LS
Sbjct: 123770 RTRAALRSRTAGGSVGRGSSSGGTTNGEAVAAVLS 123666


>gb|GL349499.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.67,
             whole genome shotgun sequence
          Length = 163634

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = +2

Query: 22    AAKIRKAAPDAEVSG--NVGRRSSFEVTVNGELIHSKLSTNG------FPDFDEVVEIVI 73
             A+ +  A P+   SG  +  ++ S +    G    +  +T G      F  FD+ VE + 
Sbjct: 47438 ASSVAVAEPEPTTSGGGSKNKKKSTKKAAGGGAKKTAAATGGSGGGGGFSIFDDPVEAIP 47617

Query: 74    SVTKGDKPRTVEK 86
             S   G KP+  +K
Sbjct: 47618 SRANGAKPKPKKK 47656


>gb|GL349467.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.35,
             whole genome shotgun sequence
          Length = 361230

 Score = 25.0 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 28    AAPDAEVSGNVGRRSSFEVTVNGELIHSKL 57
             AAP      +  +R+S E T+ G L+ SKL
Sbjct: 20379 AAPTGSTGASELQRASLETTMAGRLLSSKL 20468


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,110,197
Number of Sequences: 131
Number of extensions: 31546
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 26
length of query: 93
length of database: 9,560,209
effective HSP length: 68
effective length of query: 25
effective length of database: 9,551,301
effective search space: 238782525
effective search space used: 238782525
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)