TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Artemia franciscana SelW2
         (93 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.4 of Capsaspora owczarzaki ATCC 30864                    54   2e-08
supercontig_1.12 of Capsaspora owczarzaki ATCC 30864                   26   4.5  
supercontig_1.27 of Capsaspora owczarzaki ATCC 30864                   25   7.6  
supercontig_1.8 of Capsaspora owczarzaki ATCC 30864                    25   7.6  

>supercontig_1.4 of Capsaspora owczarzaki ATCC 30864
          Length = 2141673

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 26/54 (48%), Positives = 37/54 (68%)
 Frame = -2

Query: 17      RYQELAAKIRKAAPDAEVSGNVGRRSSFEVTVNGELIHSKLSTNGFPDFDEVVE 70
               + QE+   I+K  P A+V+G  GR  SFEVT+NGEL+HSKL++  F +   +VE
Sbjct: 1788344 KQQEIERAIQKEFPTAKVTGEGGRSKSFEVTINGELVHSKLTSGKFVNPPVIVE 1788183


>supercontig_1.12 of Capsaspora owczarzaki ATCC 30864
          Length = 1052152

 Score = 25.8 bits (55), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 39     GRRSSFEVTVNGELIHSKLST 59
              G+RS F  T N   +H+KLST
Sbjct: 965062 GQRSRFRKTTNQSRLHAKLST 965124


>supercontig_1.27 of Capsaspora owczarzaki ATCC 30864
          Length = 12464

 Score = 25.0 bits (53), Expect = 7.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -3

Query: 22   AAKIRK----AAPDAEVSGNVGRRSSFEVTVNGELIHSKLSTNGF 62
            AAKIR        DA  +GN+GRR++F  T   EL   +    GF
Sbjct: 4251 AAKIRSWLRIQEIDA*KAGNIGRRTTF--TEQAELCRQRQVRRGF 4123


>supercontig_1.8 of Capsaspora owczarzaki ATCC 30864
          Length = 1512001

 Score = 25.0 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 40    RRSSFEVTVNGELIHSKLSTNGFP 63
             RRSS  ++++   IHS+L  + FP
Sbjct: 78936 RRSSISISISNSFIHSQLIHSLFP 79007


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,840,397
Number of Sequences: 89
Number of extensions: 28598
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 17
length of query: 93
length of database: 9,347,932
effective HSP length: 68
effective length of query: 25
effective length of database: 9,341,880
effective search space: 233547000
effective search space used: 233547000
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)