Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q selw_sili.aa.fa -t genome_selw_sili_subseq.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: gi|299470283|emb|CBN79587.1| Selenoprotein W [Ectocarpus siliculosus]
        Target: gi|299508033|emb|FN649734.1|:subseq(3984081,20000) Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG09:[revcomp]
         Model: protein2genome:local
     Raw score: 670
   Query range: 0 -> 146
  Target range: 11399 -> 9999

     1 : MetArgIleAlaLeuLeuSerLeuAlaAlaLeuArgCysSerProPheSerAlaThrVal :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetArgIleAlaLeuLeuSerLeuAlaAlaLeuArgCysSerProPheSerAlaThrVal
 11399 : ATGAGGATCGCCTTGCTCTCTCTTGCAGCACTCCGGTGCTCTCCCTTTAGCGCCACCGTG : 11342

    21 : GlnAlaPheAlaThrProValSerSerLeu{Se}  >>>> Target Intron 1 >>> :    31
         ||||||||||||||||||||||||||||||{||}            363 bp        
         GlnAlaPheAlaThrProValSerSerLeu{Se}++                        
 11341 : CAAGCTTTCGCCACGCCTGTCTCCTCCTTG{AG}gt........................ : 11305

    32 : >  {r}AlaAlaAsnArgValAspIleArgSerLeuAsnAlaSerAlaGlyMetSerThr :    49
            {|}||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ++{r}AlaAlaAsnArgValAspIleArgSerLeuAsnAlaSerAlaGlyMetSerThr
 11304 : .ag{T}GCGGCGAACAGAGTTGATATCCGAAGCCTTAACGCAAGCGCGGGCATGTCCACT : 10892

    50 : ThrThrAlaGlyArgGlyGluAspValAlaGluIleGlu  >>>> Target Intron  :    63
         |||||||||||||||||||||||||||||||||||||||            599 bp   
         ThrThrAlaGlyArgGlyGluAspValAlaGluIleGlu++                   
 10891 : ACTACAGCGGGACGCGGCGAGGACGTCGCCGAAATCGAGgt................... : 10848

    64 : 2 >>>>  IleMetTyrCysGlyGlyUnkGlyTyrValArgPheTyrAsnArgLeuThrP :    80
                 ||||||||||||||||||   |||||||||||||||||||||||||||||||
               ++IleMetTyrCysGlyGly***GlyTyrValArgPheTyrAsnArgLeuThrP
 10847 : ......agATCATGTACTGCGGAGGATGAGGCTACGTGCGGTTTTACAACCGCCTGACGC : 10200

    81 : roGlnLeuGluAlaValPheGlyAspArgIleSerPheIleGlnThrGluAspProGlyV :   100
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         roGlnLeuGluAlaValPheGlyAspArgIleSerPheIleGlnThrGluAspProGlyV
 10199 : CCCAGCTGGAGGCGGTGTTCGGCGACCGCATCAGCTTCATCCAGACCGAGGACCCCGGGG : 10140

   101 : alThrGlyArgPheGluValValLeuArgAsnThrGlyGluLeuLeuHisSerLysLysT :   120
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         alThrGlyArgPheGluValValLeuArgAsnThrGlyGluLeuLeuHisSerLysLysT
 10139 : TCACCGGGCGCTTCGAGGTGGTGCTGCGCAACACCGGGGAGCTGCTGCACAGCAAGAAGA : 10080

   121 : hrArgGlyGlnGlyArgCysGluAspProArgGluValGlnAlaLeuValAspGlnIleG :   140
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         hrArgGlyGlnGlyArgCysGluAspProArgGluValGlnAlaLeuValAspGlnIleG
 10079 : CCCGCGGCCAGGGCCGCTGCGAGGACCCCCGCGAGGTGCAGGCCCTGGTCGACCAAATCC : 10020

   141 : lnLysPheLeuAspSerSer :   146
         ||||||||||||||||||||
         lnLysPheLeuAspSerSer
 10019 : AGAAGTTCTTGGACTCTTCG : 10000

vulgar: gi|299470283|emb|CBN79587.1| 0 146 . gi|299508033|emb|FN649734.1|:subseq(3984081,20000) 11399 9999 - 670 M 30 90 S 0 2 5 0 2 I 0 359 3 0 2 S 1 1 M 31 93 5 0 2 I 0 595 3 0 2 M 84 252
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	gene	10000	11399	670	-	.	gene_id 1 ; sequence gi|299470283|emb|CBN79587.1| ; gene_orientation +
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	cds	11308	11399	.	-	.	
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	exon	11308	11399	.	-	.	insertions 0 ; deletions 0
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	splice5	11306	11307	.	-	.	intron_id 1 ; splice_site "GT"
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	intron	10945	11307	.	-	.	intron_id 1
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	splice3	10945	10946	.	-	.	intron_id 0 ; splice_site "AG"
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	cds	10851	10944	.	-	.	
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	exon	10851	10944	.	-	.	insertions 0 ; deletions 0
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	splice5	10849	10850	.	-	.	intron_id 2 ; splice_site "GT"
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	intron	10252	10850	.	-	.	intron_id 2
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	splice3	10252	10253	.	-	.	intron_id 1 ; splice_site "AG"
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	cds	10000	10251	.	-	.	
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	exon	10000	10251	.	-	.	insertions 0 ; deletions 0
gi|299508033|emb|FN649734.1|:subseq(3984081,20000)	exonerate:protein2genome:local	similarity	10000	11399	670	-	.	alignment_id 1 ; Query gi|299470283|emb|CBN79587.1| ; Align 11400 1 90 ; Align 10944 32 93 ; Align 10252 63 252
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis