TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|76781476|ref|NP_778198.2| selenoprotein V [Mus musculus]
         (328 letters)

Database: genome_pal.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|284795334|gb|GL290988.1| Polysphondylium pallidum PN500 unpla...    28   7.3  
gi|284795322|gb|GL290998.1| Polysphondylium pallidum PN500 unpla...    28   9.6  

>gi|284795334|gb|GL290988.1| Polysphondylium pallidum PN500 unplaced
             genomic scaffold PPL_scaffold6, whole genome shotgun
             sequence
          Length = 2018088

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 290   FEVFVDGKLIHSKKKGDGFVDESGLKKLVGAIDEEIK 326
             FEVF++GK++HS        DES  K+L    DE ++
Sbjct: 19981 FEVFINGKILHSS-------DESLYKRLRNLEDENMR 19892


>gi|284795322|gb|GL290998.1| Polysphondylium pallidum PN500 unplaced
             genomic scaffold PPL_contig1, whole genome shotgun
             sequence
          Length = 1301413

 Score = 28.1 bits (61), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 234   STSEDVPTPNRILIRVMYCGLUSYGLRYIIL 264
             +T+  +PT NRI  +  +CG     LRY +L
Sbjct: 19454 TTTNSIPTTNRIQRKKSHCGTFRLLLRYYVL 19546


  Database: genome_pal.fa
    Posted date:  Mar 11, 2011  1:35 PM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.319    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,293,004
Number of Sequences: 42
Number of extensions: 35146
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 11
length of query: 328
length of database: 10,980,844
effective HSP length: 101
effective length of query: 227
effective length of database: 10,976,602
effective search space: 2491688654
effective search space used: 2491688654
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)