TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169234966|ref|NP_835234.2| selenoprotein H [Danio rerio]
         (127 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349451.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    63   5e-11
gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    30   0.39 
gb|GL349456.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   1.5  
gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    28   1.9  
gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   4.3  
gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    27   4.3  
gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   5.6  
gb|GL349484.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   7.3  
gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   7.3  
gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    26   7.3  

>gb|GL349451.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.19,
              whole genome shotgun sequence
          Length = 517691

 Score = 62.8 bits (151), Expect = 5e-11
 Identities = 40/100 (40%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
 Frame = -1

Query: 37     GLRVVIEHCKSURVYGRNAVVVREALADSHPELKVMINP-------HNPRRNSFEITLM- 88
              G  + IE C S R Y R A  +R+ALA + P+ +V++NP         PRR SFEI L+ 
Sbjct: 247295 GTVIGIERCYS*RTYARKANELRDALAGAFPDHEVVVNPPALVPAGSRPRRGSFEIVLIA 247116

Query: 89     ---DGERADVLWSGIK-KGPPRKLKFPEPAEVVTALKQAL 124
                 DG   + LWSG   K PPRK KF +  + +  ++ AL
Sbjct: 247115 GGPDGAPDEPLWSGFAIKKPPRKAKFIDHDKAIALVQAAL 246996


>gb|GL349493.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.61,
             whole genome shotgun sequence
          Length = 239416

 Score = 30.0 bits (66), Expect = 0.39
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -2

Query: 42    IEHCKSURVYGRNAVVVREALADSHPELKVMINP-HNPRRNSFEITLMDGERADVLWSGI 100
             IE+C S    GR   V R A+  + P++ V  N    PRR +FEIT    ER     S  
Sbjct: 26112 IEYCTS*GYSGRYRQVAR-AITTAFPDVVVRGNELARPRRGAFEITDYHKERCSSQSSTR 25936

Query: 101   KKGPPR-KLKFPEPAEVVTA 119
              + P R +L  P      TA
Sbjct: 25935 ARSPRRSRLSMP*SPRACTA 25876


>gb|GL349456.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.24,
              whole genome shotgun sequence
          Length = 453307

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 97     WSGIKKGPPRKLKFPEPAEVVTALKQALEKE 127
              W   ++ PP K+  P+P EV  A++Q +  E
Sbjct: 174827 WHQQRRRPPTKVAAPQPMEVAPAVEQGVAAE 174735


>gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.37,
             whole genome shotgun sequence
          Length = 357088

 Score = 27.7 bits (60), Expect = 1.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 38    LRVVIEHCKSURVYGRNAVVVREALADSHPELKVMINPHNPRR 80
             +R+++ H  +     R +++ R A A+ HPE+  ++  H PRR
Sbjct: 50107 VRLLLAHPSADITADRTSLIQR-AEAEGHPEIARLLASHRPRR 49982


>gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12,
              whole genome shotgun sequence
          Length = 562821

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 75     PHNPRRNSFEITLMDGERADVLWSGIKKGPPRKLKFPEPAEV 116
              P+NP   S +   +   +A+ L +G +   PR+ +  EPA++
Sbjct: 505434 PYNPSHLSQQSNRLAARKANALAAGPRCPQPRRQRADEPADI 505309


>gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.7,
             whole genome shotgun sequence
          Length = 618594

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -1

Query: 77    NPRRNSFEITLMDGERADVLWSGIKKGPPR 106
             +PRR   E T  DGE A V   G K G PR
Sbjct: 84768 DPRRELSEATRPDGELAQVDERGQKVGQPR 84679


>gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.28,
              whole genome shotgun sequence
          Length = 422706

 Score = 26.2 bits (56), Expect = 5.6
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
 Frame = -1

Query: 45     CKSURVYGRNAVVVREALADSHPELKVMINPHNPRRNSFEITLMDGERADVLWS-GIK-- 101
              C+  R     AV    A+    P++ V  +  N R  S  + L  GE  +V+   G++  
Sbjct: 126243 CRRQRPVEDKAVAAGGAIR-GEPDVAVARDRGNGRDRSARVLLAGGEGQEVVVGFGVELG 126067

Query: 102    -----KGPPRKLKFPEPAEVVTALKQALEK 126
                   +GP RKL+ P    VV  +    E+
Sbjct: 126066 GGERDRGPSRKLEVPGAVTVVAVVVGGRER 125977



 Score = 25.4 bits (54), Expect = 9.5
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
 Frame = -1

Query: 54     NAVVVREALADSHPELKVMINPHNPRRNSFEITLMDGERADVLWS-GIK-------KGPP 105
              N  V         P++ V  +  N R  S  + L  GE  +V+   G++       +GP 
Sbjct: 127065 NKAVAAGGAIRGEPDVAVARDRGNGRDRSARVLLAGGEGQEVVVGFGVELGGGERDRGPS 126886

Query: 106    RKLKFPEPAEVVTALKQALEK 126
              RKL+ P    VV  +    E+
Sbjct: 126885 RKLEVPGAVTVVAVVVGGRER 126823


>gb|GL349484.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.52,
             whole genome shotgun sequence
          Length = 300266

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +2

Query: 68    ELKVMINPHNPRRNSFEITLMDGERADVLWSGIKKGPPRKLKFPEPAEV 116
             +L++   PH+PR+     T  DG R D L        PR    P P  V
Sbjct: 48254 DLRLWPRPHHPRQRGRLCTADDGVRGDAL-------VPRARGHPRPHRV 48379


>gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.16,
              whole genome shotgun sequence
          Length = 538444

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 58     VREALADSHPELKVMINPHNPRRNSF---EITLMDGERADVLWSGIKKGPPR 106
              V  AL    PEL +++ PH    N      +  +DG   D   + + K  P+
Sbjct: 378929 VEPALLGEEPELAIVVGPHQREHNRLLFHALERVDGPNVDACVAIVGKHAPQ 379084


>gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.1,
              whole genome shotgun sequence
          Length = 716227

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 95     VLWSGIKKGPPRKLKFPEPAEVVTALKQAL 124
              +LW  ++  PP  L+  E +  V AL +AL
Sbjct: 607176 LLWHSLEASPPLALRLVEASTTVCALVEAL 607265


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,767,996
Number of Sequences: 131
Number of extensions: 92377
Number of successful extensions: 366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 59
length of query: 127
length of database: 9,560,209
effective HSP length: 87
effective length of query: 40
effective length of database: 9,548,812
effective search space: 381952480
effective search space used: 381952480
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)