TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169234966|ref|NP_835234.2| selenoprotein H [Danio rerio]
         (127 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.12 of Capsaspora owczarzaki ATCC 30864                   39   8e-04
supercontig_1.19 of Capsaspora owczarzaki ATCC 30864                   28   1.4  
supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    28   1.9  
supercontig_1.9 of Capsaspora owczarzaki ATCC 30864                    27   3.2  
supercontig_1.15 of Capsaspora owczarzaki ATCC 30864                   25   9.3  
supercontig_1.4 of Capsaspora owczarzaki ATCC 30864                    25   9.3  

>supercontig_1.12 of Capsaspora owczarzaki ATCC 30864
          Length = 1052152

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 13/31 (41%), Positives = 25/31 (80%)
 Frame = -2

Query: 95     VLWSGIKKGPPRKLKFPEPAEVVTALKQALE 125
              ++W+G+K+GPPR  KFP+ A++V  ++Q ++
Sbjct: 859350 LVWTGVKRGPPRNDKFPDGAKLVADIRQLIQ 859258



 Score = 32.3 bits (72), Expect = 0.076
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 67     PELKVMINPHNPRRNSFEITLMDG 90
              P+ +++INP+ PRR SFE T+  G
Sbjct: 859544 PDAEILINPNKPRRGSFECTMQLG 859473


>supercontig_1.19 of Capsaspora owczarzaki ATCC 30864
          Length = 161746

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
 Frame = -2

Query: 40    VVIEHC-KSURVYGRNAVVVREALADSHPELKVMINPHNPRRNSFEITLMDGERADVLWS 98
             +V+ HC K+ R  G NA       +  H  L      H  +  + E  +   ER+D+LW 
Sbjct: 71580 LVVNHCRKNARSRGENA-------SHRHGVLGAQRRLHGDKAATIERKV---ERSDILWF 71431

Query: 99    GIK--------KGPPRKLKFPEPAEVV 117
             G++        + P + L+ P  AEV+
Sbjct: 71430 GVEVANTKHK*EQPNKLLQTPRGAEVM 71350


>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 27.7 bits (60), Expect = 1.9
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
 Frame = -1

Query: 47      SURVYGRNA---VVVREALADSHPEL-KVMINPH----NPRRNSFEITLMDGERADVLWS 98
               S RV  RN    ++V+EA   + P L KV         +PR+  + I  ++  R  + W 
Sbjct: 2462112 SKRVARRNTNVFIIVKEATNTNQPHLNKVRAGSSGRSTSPRKAPYSIQRLNRRRPQIQWL 2461933

Query: 99      GIKKGPPRKLK 109
                +   PP  LK
Sbjct: 2461932 FVIHAPPDSLK 2461900



 Score = 27.3 bits (59), Expect = 2.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 36      TGLRVVIEHCKSURVYGRNAVVVREALADSHPELKVMINPHNPRRNSFEI 85
               T   V   HC    V G   +V R    D+H  + V+  P +P+  S E+
Sbjct: 1193410 TAALVASRHCMQMLVLGAQLLVQRRRWLDAHANVVVL*LPAHPQPPSAEL 1193559


>supercontig_1.9 of Capsaspora owczarzaki ATCC 30864
          Length = 1380613

 Score = 26.9 bits (58), Expect = 3.2
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
 Frame = -2

Query: 39      RVVIEHCKSURVYGRNAVVVREALAD-------SHPELKVMINPHNPRRNSFEITLMDGE 91
               R+V  H +S +   R  +  RE           +HP L +   PH P   +    + +GE
Sbjct: 1215825 RLVAAHPRSHQQAQRKVLCRRERRRPQHCPR*LAHPRLHLFHCPHRPFAQAHRH*VHEGE 1215646

Query: 92      RADVLWSG 99
               R   LW G
Sbjct: 1215645 RCCWLWRG 1215622


>supercontig_1.15 of Capsaspora owczarzaki ATCC 30864
          Length = 930169

 Score = 25.4 bits (54), Expect = 9.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 92     RADVLWSGIKKGPPRKLKFPEPAEVVTALKQAL 124
              RADVLW G+++   ++++   P  + + +   L
Sbjct: 922113 RADVLWGGVRRAFAQEVRLMMPLSIRSPISPTL 922015


>supercontig_1.4 of Capsaspora owczarzaki ATCC 30864
          Length = 2141673

 Score = 25.4 bits (54), Expect = 9.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = +3

Query: 38     LRVVIEHCKSURVYG-RNAVVVREALADS-----HPELKVMINPHNPRRNSFEITLMDGE 91
              LR + +HC+  R +G R A   R  ++ S      P  K+ + P  P  N+  I  M G 
Sbjct: 624003 LRCLAQHCQGRRAHGRRQAQAARVTVSKSGWRLLRPVCKLPLAPCPPVSNNASIP-MCG* 624179

Query: 92     RADVLW 97
               +  LW
Sbjct: 624180 SSGALW 624197


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,576,614
Number of Sequences: 89
Number of extensions: 46463
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 42
length of query: 127
length of database: 9,347,932
effective HSP length: 87
effective length of query: 40
effective length of database: 9,340,189
effective search space: 373607560
effective search space used: 373607560
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)