TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|323448484|gb|EGB04382.1| selenoprotein [Aureococcus
anophagefferens]
         (113 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    91   8e-20
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   0.40 
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   7.5  
gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    25   9.8  

>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun
              sequence
          Length = 1007773

 Score = 91.3 bits (225), Expect = 8e-20
 Identities = 48/83 (57%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
 Frame = +1

Query: 33     VVVEACKSUGAFKTRANKVLKALEGKAEVKINEEKPRKGAFVVSVG--DTKVVELLDMKR 90
              V +EACK  GAFKTRAN ++KA+  KA++ IN EKP KG FVV V   D  +VELL +KR
Sbjct: 837241 VAIEACKQ*GAFKTRANTIVKAVGDKAKISINAEKPGKGNFVVRVSGQDAPLVELLGLKR 837420

Query: 91     PFPALKALDMDDVAADVEKALAA 113
              PFP LKALDM++V   V +A+ A
Sbjct: 837421 PFPPLKALDMEEVCEKVLQAIEA 837489


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun
              sequence
          Length = 976485

 Score = 29.3 bits (64), Expect = 0.40
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 57     GKAEVKINEEKPRKGAFVVSVGDTKVVELLDMKRPFPALKALDM 100
              G AE K + ++PR G       + K+V    M RPF   +  D+
Sbjct: 232230 GSAESKKSRDEPRNGGVQPHTAEIKIVHTKTMPRPFERRRLRDI 232099



 Score = 26.9 bits (58), Expect = 2.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 54     ALEGKAEVKINEEKPRKGAFVVSVGDTKVVELLDMKRPFPALKALD 99
              A++GK  + ++E +PR   F  S  DT +V+ L + +P P + + D
Sbjct: 919323 AIDGKVLIGVDESRPRSVEFS*ST-DTALVK-LRLTKPVPQMSSFD 919192


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
              sequence
          Length = 2535400

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 70     KGAFVVSVGDTKVVELLDM 88
              +GAFVVS  D K++ +LD+
Sbjct: 162402 RGAFVVSTEDKKILGVLDL 162458


>gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun
              sequence
          Length = 662217

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 58     KAEVKINEEKPRKGAFVVSVGDTKVVELLD 87
              + + ++ + +PR+G  + +VG +  VELLD
Sbjct: 535905 RGKFRLGQGRPRRGLRMSNVGLSNPVELLD 535816


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.311    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,739,584
Number of Sequences: 31
Number of extensions: 14525
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 10
length of query: 113
length of database: 7,911,228
effective HSP length: 84
effective length of query: 29
effective length of database: 7,908,624
effective search space: 229350096
effective search space used: 229350096
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)