Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q aureo.fa -t genome_selh_tri_subseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: A.anophagefferens
        Target: gi|217408210|gb|CM000611.1|:subseq(787241,80000) Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 213
   Query range: 2 -> 113
  Target range: 49909 -> 50248

     3 : ProLysArgLysAlaSerAlaLysGlnAspSerGluProLysLysAlaAlaLysThrLys :    22
         |||  !..!... !!:!!|||        ! !!!   !!:!! ! .!!!.! !   !|||
         ProAlaGluSerProAlaAlaProAlaThrProAlaAlaGluAspThrGlyAspGluLys
 49910 : CCTGCGGAATCTCCCGCCGCTCCCGCTACTCCGGCTGCCGAAGACACTGGCGATGAGAAG : 49967

    23 : AlaAspAlaProProSerGluGlyGlyValValValValGluAlaCysLysSerUnkGly :    42
           !  !!.! !!  !..!:!!  !  !..!|||!.!:!!||||||||||||..!   |||
         LysThrGlyThrAspAspGlnLysLysThrValAlaIleGluAlaCysLysGln***Gly
 49968 : AAGACCGGGACCGACGATCAAAAGAAGACTGTAGCTATTGAGGCCTGCAAGCAATGAGGC : 50027

    43 : AlaPheLysThrArgAlaAsnLysValLeuLysAlaLeuGluGlyLysAlaGluValLys :    62
         |||||||||||||||||||||!  :!!:!!||||||:!!! !! !||||||:!!:!!..!
         AlaPheLysThrArgAlaAsnThrIleValLysAlaValGlyAspLysAlaLysIleSer
 50028 : GCTTTCAAGACACGGGCCAACACCATTGTCAAGGCTGTGGGGGACAAGGCCAAGATCTCA : 50087

    63 : IleAsnGluGluLysProArgLysGlyAlaPheValValSerValGly<-><->AspThr :    80
         ||||||!  ||||||||| !!||||||  !||||||||| !!|||.!!      |||.!!
         IleAsnAlaGluLysProGlyLysGlyAsnPheValValArgValSerGlyGlnAspAla
 50088 : ATCAATGCCGAAAAACCTGGCAAGGGGAATTTCGTCGTTCGCGTCAGTGGGCAAGATGCT : 50147

    81 : LysValValGluLeuLeuAspMetLysArgProPheProAlaLeuLysAlaLeuAspMet :   100
           !:!!||||||||||||! !:!:||||||||||||||| !!||||||||||||||||||
         ProLeuValGluLeuLeuGlyLeuLysArgProPheProProLeuLysAlaLeuAspMet
 50148 : CCATTGGTGGAACTTTTGGGTCTAAAGCGCCCATTCCCACCGTTGAAGGCTTTGGATATG : 50207

   101 : AspAspValAlaAlaAspValGluLysAlaLeuAlaAla :   113
         !!:!!:|||..!! ! ! |||   :!!|||:!!! !|||
         GluGluValCysGluLysValLeuGlnAlaIleGluAla
 50208 : GAGGAAGTATGTGAGAAAGTGCTCCAAGCGATTGAGGCA : 50248

vulgar: A.anophagefferens 2 113 . gi|217408210|gb|CM000611.1|:subseq(787241,80000) 49909 50248 + 213 M 76 228 G 0 6 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-03-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|217408210|gb|CM000611.1|:subseq(787241,80000)	exonerate:protein2genome:local	gene	49910	50248	213	+	.	gene_id 1 ; sequence A.anophagefferens ; gene_orientation .
gi|217408210|gb|CM000611.1|:subseq(787241,80000)	exonerate:protein2genome:local	cds	49910	50248	.	+	.	
gi|217408210|gb|CM000611.1|:subseq(787241,80000)	exonerate:protein2genome:local	exon	49910	50248	.	+	.	insertions 6 ; deletions 0
gi|217408210|gb|CM000611.1|:subseq(787241,80000)	exonerate:protein2genome:local	similarity	49910	50248	213	+	.	alignment_id 1 ; Query A.anophagefferens ; Align 49910 3 228 ; Align 50144 79 105
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis