T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:2 sec.
SCORE=91
*
BAD AVG GOOD
*
sps2-D.melanoga : 91
M.musculus : 92
B.hominis : 92
C.merolae : 89
C.owczarzaki : 92
H.arabidopsidis : 93
N.gruberi : 82
P.pallidum : 92
P.tricornutum : 71
P.ultimum : 94
S.parasitica : 93
T.trahens : 91
cons : 91
sps2-D.melanoga ---------------------------------------MFQPEK
M.musculus MAEAAAAGASGETMAALVAAEGSLGPAGWSAGRSFSNYRPFEPQT
B.hominis ---------------------------------------------
C.merolae ---------------------------------------------
C.owczarzaki ----------------------------------------FNPET
H.arabidopsidis ----------------------------------------FDPLS
N.gruberi ----------------------------------------FSAEN
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------IFDPVD
S.parasitica ----------------------------------------FNPTD
T.trahens ----------------------------------------FDPTS
cons
sps2-D.melanoga HGLEPDFQLTKFTTHTGXSCKIPQKVLEKYLRGTEI-ENKNN---
M.musculus LGFSPSWRLTSFSGMKGXGCKVPQETLLKLLEGLTRPALQPPLTS
B.hominis ----------------GXGCKVPQAKLLEYLKGVG-TSI------
C.merolae ------FRLTRYSTLKGCGCKVPQSELLEWMTATK-NLLRSPMKS
C.owczarzaki LGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNN-----
H.arabidopsidis LGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDV------
N.gruberi EGFNV--KLTSTTHGLGCGCKIRAQTLSSILSKIPKQPF------
P.pallidum -------RLTDYTKLKGXGCKIPQKELLSLLEGIG-D--------
P.tricornutum ---------------------------------------------
P.ultimum LGLDPSFTLTDFSALKGCGCKLPQAKLLGYLEDIA-NDL------
S.parasitica HGLREDFRLTDFSALKGXGCKLPQEKLLSYISGIA-NDL------
T.trahens LGLPPGFRLTDYAKLKGXGCKVSQEDLHGLLESTPLP-SPP----
cons
sps2-D.melanoga -----------------------------D-GYLI-----GSGMD
M.musculus -----GLVGGQEETVQEGGLS--TRPGPGSAFPSL-----SIGMD
B.hominis -------------------------------KENE-----TPGLD
C.merolae FSRPGGLMST----------SNTESSTPGDVSVEL-----GVGMD
C.owczarzaki -----------------------------AVDGTI-----GVGLD
H.arabidopsidis -------------------------------KPNE-----TPGMD
N.gruberi -------------------------------DPNVLVGT-ETSDD
P.pallidum ----------------------------------------GIGYD
P.tricornutum --------------------------------------------D
P.ultimum -------------------------------KPNE-----TPGMD
S.parasitica -------------------------------KPNEVS-AXTPGMD
T.trahens -----------------------------XXIDNE-----AIGLD
cons *
sps2-D.melanoga CAVIPLKRH-------------------KDYLLIQTVDFFYPMVN
M.musculus SCVIPLRH--------------------GGLSLVQTTDFFYPLVE
B.hominis CAVVKTK--------------------------ISTTDFFYPSVD
C.merolae ASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVE
C.owczarzaki SCVTETRH--------------------PGLYLVQTTDFFFPLIE
H.arabidopsidis SSVVKISHG-------------------SGLYLVSTTDFFFPSVE
N.gruberi CGVYKLT---------------------SELALCATVDFFTPIVD
P.pallidum CAIVPTKF--------------------PDIVMVTTTDFFFPNVD
P.tricornutum AAVQILPNK-------------------AGGAIVQTIDYFREIVK
P.ultimum SSVVKISHG-------------------KDLYMISTTDFFFPSVE
S.parasitica SSVVKIKHPK-----------------FGDLYMISTTDFFYPLVQ
T.trahens CSIIPTAI--------------------EGVVTIQTTDYFYPLVE
cons . : * *:* :.
sps2-D.melanoga DPELLGRIALANVLSDVYAVGV-TQFDTVEMIVSTSTSFSE-KER
M.musculus DPYMMGRIACANVLSDLYAMGI-TECDNMLMLLSVSQSMSE-KER
B.hominis DPYVQGKIAACNVLSDMYAMGV-TEVDTMLMILGVSVDMEP-DAM
C.merolae DPYLMGRIAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALR
C.owczarzaki DPYQMGRIACANVLSDLYAMGV-SECDNMLMLLGVSTTLTP-EES
H.arabidopsidis DPYVQGQIACANVLSDVYAMGV-TEVDTMLMILGVCRDMTE-KQR
N.gruberi SPKDFGAIACANALSDVYAMGG--ECKVALNIVAFPVK---R-LS
P.pallidum DPYLMGKIACANVLSDLYSFGI-DECDNMLMLLAASTDMTP-ENR
P.tricornutum DPFTFGKIVAVHALSDIHAMGA-TPQTAMTLAVAPFAADE-ENPK
P.ultimum DPYVQGKIACANVLSDVYAMGV-TEVDTMLMILGVCRDMSE-KER
S.parasitica DPYVQGRIACANVLSDLYAMGV-TEVDTMLMILGVSRTMTD-LER
T.trahens DPYQQGRIACANVLSDLFAMGI-SRCDTMLMILAASLEMPK-DQR
cons .* * *. :.*** .:.* :
sps2-D.melanoga DVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSV
M.musculus EKVTPLMIKGFRDAAEEGG---TAVTGGQTVVNPWIIIGGVATVV
B.hominis DYVTKELIRGFNDQARVAV---TNVTGGQTVRNPWPMIGGVASST
C.merolae AGVTQTMMAGFIDACHEAG---TQVTGGQTTLNPWPLIGGVAEVV
C.owczarzaki VIVTPLVMKGFHDLCQEAG---TNVLGGQTVKNPWFLLGGVATSV
H.arabidopsidis DVVTTEMIRGFNDLARQAQ---TNVTGGQTVMNPWPIVGGVAMSV
N.gruberi LDILQLILQGAQEKASEAG---VTIIGGHSIEDNEPKFGMCVSGL
P.pallidum NWSTRGLIQGFNDHCNLAG---TKVRGGQTVKNPWPLIGGVATAI
P.tricornutum ---------------------------------------------
P.ultimum DVVTTQMIRGFNDLARKAE---TNVTGGQTVMNPWPIVGGVAMSV
S.parasitica DVVTTQLIHGFNDLAREAG---TNVTGGQTVMNPWPIVGGVAMSV
T.trahens MIVTRELIRGFNDLATEAG---TSVTGGQTVLNPWPIIGGVASAV
cons
sps2-D.melanoga CRS-EEIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQL-----NQ
M.musculus CQQ-NEFIMPDSAVVGDVLVLTKPLGTQVAANAHQWL------DN
B.hominis CREGEDFIRPVHGEPGDVIVLTKPLGTQLAVNMFEWL------RT
C.merolae LPR-GEFLMPDAAQPGDTIVLTKPLGTQVAINLYQWL------GQ
C.owczarzaki VGR-HEMIMPDGAKSGDVLVLTKPLGNQLAVNAHQWML-----TD
H.arabidopsidis RSE-MQIIRPENAVVGDVIILTKPLGTQVAVNVFQWK------KK
N.gruberi VHP-ERIWKNVGCRNGDVLLLTKPIGTGVLTTAMKKGL-----IG
P.pallidum IRK-DEMIMPVNAVPGDVLVLTKPLGTQVCANFHQWI------RQ
P.tricornutum ---------------------------------------------
P.ultimum RSE-SEIIRPVNAQVGDVIILTKALGTQVAVNLFQWR------KR
S.parasitica RAE-SEIIRPENATAGQMLVLTKPLGTQLAVNAYQMK------DQ
T.trahens VPSDGGYIDPFSLVPGDVMVLTKPIGTQVAVNAYQWLGDHEAGKE
cons
sps2-D.melanoga TE--KYKKLLSECSDADIKETFEIAVKSMTYLNKNAALLMH----
M.musculus PE--KWNKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMH----
B.hominis AA--KFNRVRAVLSVEDVVASYKMAMESMSTLNLEGARLMW----
C.merolae MEDAHYLHLLEMLTPADICRAYDVACLSMAHLNARAAQLLL----
C.owczarzaki PE--RYKRLDGVLTNEQVIEAYEHAITNMTRLSRVAARLMR----
H.arabidopsidis PE--QWQRVNQVVTPHDADVAFQMASESMGRLNLNAAKMMH----
N.gruberi PND----------------DCSKKCIEWMSTLNKSASEILRGLHR
P.pallidum PE--KWAKIADIATVEEAVETFTYATQSMARLNRIGARLMR----
P.tricornutum ---------------------------------------------
P.ultimum PE--RWQRVADVVTVQDAEHGFAMASESMSRLNLNAARLMH----
S.parasitica PA--RWSKVESFLTREMADRAFSVASESMSRLNVNGAKLMH----
T.trahens GS--NWDLIADVLSPAQARVAFALASASMARLNKSGAALMV----
cons
sps2-D.melanoga ------KYQ-AHCATDITGFGLLGHANNLAQFQKEKVLFQINKLP
M.musculus ------TFN-AHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLP
B.hominis ------KHH-AHGCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLP
C.merolae ------ESGAAHAVTDITGFGILGHAQNLARNQKAPVDMEIDVLP
C.owczarzaki ------EFG-AHAATDVTGFGILGHARNLARSQKDSVNFEIDVFP
H.arabidopsidis ------KHG-AHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLP
N.gruberi VNSSSTPYE-IHACTDITGFGLMG---------------------
P.pallidum ------KYG-AHAATDVTGFGIAGHSDNLAKSQLQPVVFEIHTLP
P.tricornutum ---------------------------------------------
P.ultimum ------KYG-AHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLP
S.parasitica ------KHG-VTSATDVTGFGILGHAQNMATSQKADVDFELHTLP
T.trahens ------KHG-AHGATDVTGFGLLGHARNLAEHQKAAVHISIHTLP
cons
sps2-D.melanoga IIKNVLKFSTLVG--QSTKFRSGRSVETSGGLLICLPADA-AD--
M.musculus IIAKMAAISKAS---GRFGLLQGTSAETSGGLLICLPREQ-AA--
B.hominis IIKNMARVESHLN--NNWNLFKGRSAETSGGLMIMMRPED-AE--
C.merolae IIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASS-TERS
C.owczarzaki VLRHMIAMERAT---PVFHLLEGTSAETSGGLLIA----------
H.arabidopsidis IIKNMVKVNEVIG--NSFKLLDGFAAETSGGLLLCLPAEN-AE--
N.gruberi ---------------------------------------------
P.pallidum IIEHMKKIDVHLN--NNWNLCRGLSAETSGGLLIAMPEDK-AR--
P.tricornutum ------------------ELLVGLCA-------------------
P.ultimum IIQHMVKVNETIG--NSFRLLEGFAAETSGGLLLCLPAEH-AD--
S.parasitica VIKDMLAVNEAFN--GQWRLELGFSSETSGGLLVSIDADR-----
T.trahens VIENMPAVNDKF----NFKLLDGWSSETSGGLLVALPSADAAA--
cons
sps2-D.melanoga ------KFCRDFEEATNGE-QKSFQ--IGHVTAANESDAVLCEDV
M.musculus ------RFCSEIKSSKYGEGHQAWI--VGIVEKGNRT-ARIIDKP
B.hominis ------AYIKEYKEITG--H-DAWI--IGKVVEGQRK-GYVVENP
C.merolae SQVVARQFCEKLATVDD--HWPAWI--VGRVVPGSRE-ARILDHV
C.owczarzaki ---------------------------------------------
H.arabidopsidis ------AFIKELR--------------------------------
N.gruberi ---------------------------------------------
P.pallidum ------EFVKEIEEKTS--S-EAFSFSSSSELSSS----------
P.tricornutum ---------------------------------------------
P.ultimum ------A--------------------------------------
S.parasitica ---------------------------------------------
T.trahens ------AFCADI---------------------------------
cons
sps2-D.melanoga EFIEV----------------------SL
M.musculus RVIEVLPRGASAAAAAAPDNSNAASEPSS
B.hominis TLI------------------------EV
C.merolae KIL------------------------EV
C.owczarzaki ----------------------------L
H.arabidopsidis ----------------------------E
N.gruberi ----------------------------H
P.pallidum -RS------------------------SS
P.tricornutum ---------------------------QG
P.ultimum ----------------------------Y
S.parasitica ----------------------------A
T.trahens ----------------------------E
cons