T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:2 sec.
SCORE=91
*
 BAD AVG GOOD
*
sps2-D.melanoga   :  91
M.musculus        :  92
B.hominis         :  92
C.merolae         :  89
C.owczarzaki      :  92
H.arabidopsidis   :  93
N.gruberi         :  82
P.pallidum        :  92
P.tricornutum     :  71
P.ultimum         :  94
S.parasitica      :  93
T.trahens         :  91
cons              :  91

sps2-D.melanoga   ---------------------------------------MFQPEK
M.musculus        MAEAAAAGASGETMAALVAAEGSLGPAGWSAGRSFSNYRPFEPQT
B.hominis         ---------------------------------------------
C.merolae         ---------------------------------------------
C.owczarzaki      ----------------------------------------FNPET
H.arabidopsidis   ----------------------------------------FDPLS
N.gruberi         ----------------------------------------FSAEN
P.pallidum        ---------------------------------------------
P.tricornutum     ---------------------------------------------
P.ultimum         ---------------------------------------IFDPVD
S.parasitica      ----------------------------------------FNPTD
T.trahens         ----------------------------------------FDPTS

cons                                                           


sps2-D.melanoga   HGLEPDFQLTKFTTHTGXSCKIPQKVLEKYLRGTEI-ENKNN---
M.musculus        LGFSPSWRLTSFSGMKGXGCKVPQETLLKLLEGLTRPALQPPLTS
B.hominis         ----------------GXGCKVPQAKLLEYLKGVG-TSI------
C.merolae         ------FRLTRYSTLKGCGCKVPQSELLEWMTATK-NLLRSPMKS
C.owczarzaki      LGLPADWRLTKFTQLKGCGCKVPQKDLLKLLEVFRANSNN-----
H.arabidopsidis   LGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDV------
N.gruberi         EGFNV--KLTSTTHGLGCGCKIRAQTLSSILSKIPKQPF------
P.pallidum        -------RLTDYTKLKGXGCKIPQKELLSLLEGIG-D--------
P.tricornutum     ---------------------------------------------
P.ultimum         LGLDPSFTLTDFSALKGCGCKLPQAKLLGYLEDIA-NDL------
S.parasitica      HGLREDFRLTDFSALKGXGCKLPQEKLLSYISGIA-NDL------
T.trahens         LGLPPGFRLTDYAKLKGXGCKVSQEDLHGLLESTPLP-SPP----

cons                                                           


sps2-D.melanoga   -----------------------------D-GYLI-----GSGMD
M.musculus        -----GLVGGQEETVQEGGLS--TRPGPGSAFPSL-----SIGMD
B.hominis         -------------------------------KENE-----TPGLD
C.merolae         FSRPGGLMST----------SNTESSTPGDVSVEL-----GVGMD
C.owczarzaki      -----------------------------AVDGTI-----GVGLD
H.arabidopsidis   -------------------------------KPNE-----TPGMD
N.gruberi         -------------------------------DPNVLVGT-ETSDD
P.pallidum        ----------------------------------------GIGYD
P.tricornutum     --------------------------------------------D
P.ultimum         -------------------------------KPNE-----TPGMD
S.parasitica      -------------------------------KPNEVS-AXTPGMD
T.trahens         -----------------------------XXIDNE-----AIGLD

cons                                                          *


sps2-D.melanoga   CAVIPLKRH-------------------KDYLLIQTVDFFYPMVN
M.musculus        SCVIPLRH--------------------GGLSLVQTTDFFYPLVE
B.hominis         CAVVKTK--------------------------ISTTDFFYPSVD
C.merolae         ASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVE
C.owczarzaki      SCVTETRH--------------------PGLYLVQTTDFFFPLIE
H.arabidopsidis   SSVVKISHG-------------------SGLYLVSTTDFFFPSVE
N.gruberi         CGVYKLT---------------------SELALCATVDFFTPIVD
P.pallidum        CAIVPTKF--------------------PDIVMVTTTDFFFPNVD
P.tricornutum     AAVQILPNK-------------------AGGAIVQTIDYFREIVK
P.ultimum         SSVVKISHG-------------------KDLYMISTTDFFFPSVE
S.parasitica      SSVVKIKHPK-----------------FGDLYMISTTDFFYPLVQ
T.trahens         CSIIPTAI--------------------EGVVTIQTTDYFYPLVE

cons              . :                                * *:*   :.


sps2-D.melanoga   DPELLGRIALANVLSDVYAVGV-TQFDTVEMIVSTSTSFSE-KER
M.musculus        DPYMMGRIACANVLSDLYAMGI-TECDNMLMLLSVSQSMSE-KER
B.hominis         DPYVQGKIAACNVLSDMYAMGV-TEVDTMLMILGVSVDMEP-DAM
C.merolae         DPYLMGRIAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALR
C.owczarzaki      DPYQMGRIACANVLSDLYAMGV-SECDNMLMLLGVSTTLTP-EES
H.arabidopsidis   DPYVQGQIACANVLSDVYAMGV-TEVDTMLMILGVCRDMTE-KQR
N.gruberi         SPKDFGAIACANALSDVYAMGG--ECKVALNIVAFPVK---R-LS
P.pallidum        DPYLMGKIACANVLSDLYSFGI-DECDNMLMLLAASTDMTP-ENR
P.tricornutum     DPFTFGKIVAVHALSDIHAMGA-TPQTAMTLAVAPFAADE-ENPK
P.ultimum         DPYVQGKIACANVLSDVYAMGV-TEVDTMLMILGVCRDMSE-KER
S.parasitica      DPYVQGRIACANVLSDLYAMGV-TEVDTMLMILGVSRTMTD-LER
T.trahens         DPYQQGRIACANVLSDLFAMGI-SRCDTMLMILAASLEMPK-DQR

cons              .*   * *.  :.*** .:.*           :            


sps2-D.melanoga   DVVIGLVMKGFQNSLKANGYRNTPLIIRQLKINPWCIIGGIATSV
M.musculus        EKVTPLMIKGFRDAAEEGG---TAVTGGQTVVNPWIIIGGVATVV
B.hominis         DYVTKELIRGFNDQARVAV---TNVTGGQTVRNPWPMIGGVASST
C.merolae         AGVTQTMMAGFIDACHEAG---TQVTGGQTTLNPWPLIGGVAEVV
C.owczarzaki      VIVTPLVMKGFHDLCQEAG---TNVLGGQTVKNPWFLLGGVATSV
H.arabidopsidis   DVVTTEMIRGFNDLARQAQ---TNVTGGQTVMNPWPIVGGVAMSV
N.gruberi         LDILQLILQGAQEKASEAG---VTIIGGHSIEDNEPKFGMCVSGL
P.pallidum        NWSTRGLIQGFNDHCNLAG---TKVRGGQTVKNPWPLIGGVATAI
P.tricornutum     ---------------------------------------------
P.ultimum         DVVTTQMIRGFNDLARKAE---TNVTGGQTVMNPWPIVGGVAMSV
S.parasitica      DVVTTQLIHGFNDLAREAG---TNVTGGQTVMNPWPIVGGVAMSV
T.trahens         MIVTRELIRGFNDLATEAG---TSVTGGQTVLNPWPIIGGVASAV

cons                                                           


sps2-D.melanoga   CRS-EEIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQL-----NQ
M.musculus        CQQ-NEFIMPDSAVVGDVLVLTKPLGTQVAANAHQWL------DN
B.hominis         CREGEDFIRPVHGEPGDVIVLTKPLGTQLAVNMFEWL------RT
C.merolae         LPR-GEFLMPDAAQPGDTIVLTKPLGTQVAINLYQWL------GQ
C.owczarzaki      VGR-HEMIMPDGAKSGDVLVLTKPLGNQLAVNAHQWML-----TD
H.arabidopsidis   RSE-MQIIRPENAVVGDVIILTKPLGTQVAVNVFQWK------KK
N.gruberi         VHP-ERIWKNVGCRNGDVLLLTKPIGTGVLTTAMKKGL-----IG
P.pallidum        IRK-DEMIMPVNAVPGDVLVLTKPLGTQVCANFHQWI------RQ
P.tricornutum     ---------------------------------------------
P.ultimum         RSE-SEIIRPVNAQVGDVIILTKALGTQVAVNLFQWR------KR
S.parasitica      RAE-SEIIRPENATAGQMLVLTKPLGTQLAVNAYQMK------DQ
T.trahens         VPSDGGYIDPFSLVPGDVMVLTKPIGTQVAVNAYQWLGDHEAGKE

cons                                                           


sps2-D.melanoga   TE--KYKKLLSECSDADIKETFEIAVKSMTYLNKNAALLMH----
M.musculus        PE--KWNKIKMVVSREEVELAYQEAMFNMATLNRTAAGLMH----
B.hominis         AA--KFNRVRAVLSVEDVVASYKMAMESMSTLNLEGARLMW----
C.merolae         MEDAHYLHLLEMLTPADICRAYDVACLSMAHLNARAAQLLL----
C.owczarzaki      PE--RYKRLDGVLTNEQVIEAYEHAITNMTRLSRVAARLMR----
H.arabidopsidis   PE--QWQRVNQVVTPHDADVAFQMASESMGRLNLNAAKMMH----
N.gruberi         PND----------------DCSKKCIEWMSTLNKSASEILRGLHR
P.pallidum        PE--KWAKIADIATVEEAVETFTYATQSMARLNRIGARLMR----
P.tricornutum     ---------------------------------------------
P.ultimum         PE--RWQRVADVVTVQDAEHGFAMASESMSRLNLNAARLMH----
S.parasitica      PA--RWSKVESFLTREMADRAFSVASESMSRLNVNGAKLMH----
T.trahens         GS--NWDLIADVLSPAQARVAFALASASMARLNKSGAALMV----

cons                                                           


sps2-D.melanoga   ------KYQ-AHCATDITGFGLLGHANNLAQFQKEKVLFQINKLP
M.musculus        ------TFN-AHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLP
B.hominis         ------KHH-AHGCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLP
C.merolae         ------ESGAAHAVTDITGFGILGHAQNLARNQKAPVDMEIDVLP
C.owczarzaki      ------EFG-AHAATDVTGFGILGHARNLARSQKDSVNFEIDVFP
H.arabidopsidis   ------KHG-AHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLP
N.gruberi         VNSSSTPYE-IHACTDITGFGLMG---------------------
P.pallidum        ------KYG-AHAATDVTGFGIAGHSDNLAKSQLQPVVFEIHTLP
P.tricornutum     ---------------------------------------------
P.ultimum         ------KYG-AHSATDVTGFGILAHARNQAKSQTRDVNFEIHTLP
S.parasitica      ------KHG-VTSATDVTGFGILGHAQNMATSQKADVDFELHTLP
T.trahens         ------KHG-AHGATDVTGFGLLGHARNLAEHQKAAVHISIHTLP

cons                                                           


sps2-D.melanoga   IIKNVLKFSTLVG--QSTKFRSGRSVETSGGLLICLPADA-AD--
M.musculus        IIAKMAAISKAS---GRFGLLQGTSAETSGGLLICLPREQ-AA--
B.hominis         IIKNMARVESHLN--NNWNLFKGRSAETSGGLMIMMRPED-AE--
C.merolae         IIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASS-TERS
C.owczarzaki      VLRHMIAMERAT---PVFHLLEGTSAETSGGLLIA----------
H.arabidopsidis   IIKNMVKVNEVIG--NSFKLLDGFAAETSGGLLLCLPAEN-AE--
N.gruberi         ---------------------------------------------
P.pallidum        IIEHMKKIDVHLN--NNWNLCRGLSAETSGGLLIAMPEDK-AR--
P.tricornutum     ------------------ELLVGLCA-------------------
P.ultimum         IIQHMVKVNETIG--NSFRLLEGFAAETSGGLLLCLPAEH-AD--
S.parasitica      VIKDMLAVNEAFN--GQWRLELGFSSETSGGLLVSIDADR-----
T.trahens         VIENMPAVNDKF----NFKLLDGWSSETSGGLLVALPSADAAA--

cons                                                           


sps2-D.melanoga   ------KFCRDFEEATNGE-QKSFQ--IGHVTAANESDAVLCEDV
M.musculus        ------RFCSEIKSSKYGEGHQAWI--VGIVEKGNRT-ARIIDKP
B.hominis         ------AYIKEYKEITG--H-DAWI--IGKVVEGQRK-GYVVENP
C.merolae         SQVVARQFCEKLATVDD--HWPAWI--VGRVVPGSRE-ARILDHV
C.owczarzaki      ---------------------------------------------
H.arabidopsidis   ------AFIKELR--------------------------------
N.gruberi         ---------------------------------------------
P.pallidum        ------EFVKEIEEKTS--S-EAFSFSSSSELSSS----------
P.tricornutum     ---------------------------------------------
P.ultimum         ------A--------------------------------------
S.parasitica      ---------------------------------------------
T.trahens         ------AFCADI---------------------------------

cons                                                           


sps2-D.melanoga   EFIEV----------------------SL
M.musculus        RVIEVLPRGASAAAAAAPDNSNAASEPSS
B.hominis         TLI------------------------EV
C.merolae         KIL------------------------EV
C.owczarzaki      ----------------------------L
H.arabidopsidis   ----------------------------E
N.gruberi         ----------------------------H
P.pallidum        -RS------------------------SS
P.tricornutum     ---------------------------QG
P.ultimum         ----------------------------Y
S.parasitica      ----------------------------A
T.trahens         ----------------------------E

cons