T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:7 sec.
SCORE=96
*
BAD AVG GOOD
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SecS-M.musculus : 97
X.tropicalis : 97
A.taiwanensis : 96
B.hominis : 97
C.merolae : 97
C.owczarzaki : 96
E.siliculosus : 97
H.arabidopsidis : 95
N.gruberi : 94
P.pallidum : 96
P.tricornutum : 96
P.ultimum : 97
S.parasitica : 96
T.trahens : 97
cons : 96
SecS-M.musculus MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQGKCPEDG
X.tropicalis MEHESFKASERLVTPAYIRQGREARRMHEQLVRQLVEQGKCPKEP
A.taiwanensis -----------------------------------LHQRRVPDEP
B.hominis MNEKNFEYARSLIPATYVNQGRDAIKRRENLVKDLLTHRKIPEIG
C.merolae MDADLLEKARALADPAYVTVAEAARRSRTALFRQLLTQRRLLPQG
C.owczarzaki -------------NDAYIQQGADAIRTRQNLVKSLLAQRKWPELG
E.siliculosus MNGRSLEQARNLVKTSYINQGEQALNGRRKQVTALLSNRRLPTRG
H.arabidopsidis ---------------------------------------------
N.gruberi ------EIASTLIQANHVKQALQAVNKQQKMYKTLLSQRQLPKEG
P.pallidum ---------------SYVDQATQAISQYNSLINNLLSHRKLPDVG
P.tricornutum -------------------------------LRTLLVNRRLPEHG
P.ultimum MNAKNAQLAEAFVAPTYVEQGLAAIRNREQLFTALLSQRRVPDDG
S.parasitica ------------VDAAYIRQGSDALKSHEKKLTALLAQRKLPEDG
T.trahens ------ATGQRRLSPRYVRQGGVSLGGRARAVRSLLSQRQLPRQG
cons
SecS-M.musculus WDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYR
X.tropicalis WDESTIEIFLNELAVMDSNNFLGNCGVGEREGRVASGMVSRRHYR
A.taiwanensis WDELSITLLLQELAGMDMNNACRVAGAGEREGRIFSPLVYRRHFG
B.hominis WDDQSIELFLNDLSLMDSNNFLGNSGVGEREGRIAST-VAKRHFY
C.merolae LDEHTVRLLVDELAGLDANQFIDQANVGEREGRIYSELVRARHFG
C.owczarzaki WDEMSIELLLSDLAQMDSNNFPANIGAGEREARVYSDLVARRHFR
E.siliculosus WDDAQIEYLLTEISLMDSNNFSENVGVGEREGRVYSGLVARRNFR
H.arabidopsidis ---------------------------------------------
N.gruberi FSDQQIESLLSFFASMDTNNYENHIGIGEREGRVFSKLVEKRHFY
P.pallidum WDDNVIEWFINEISMMDSNNFIENIGVGEREGRLYSQIVARRHFG
P.tricornutum WSDVQIQHVLYTMATLDTNNKRSWCGVGEREGRVYSALVSSRHFG
P.ultimum WDEQTVELVLQSLAAMDSNNFRTNIGAGEREARVFSSLVAKRHFH
S.parasitica WDDLSIQVLLNDLAQMDSNNFAHNAGAGEREARVASSLVRNRCFH
T.trahens WNEASISAFLDELATMDSNNFADRAGVGEREARVFSPLVARRHFG
cons
SecS-M.musculus FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKL-AGVH--
X.tropicalis LIHGIGRSGDISAIQPKAAGSSVLNKLTNSMVLDIIRL-AGVR--
A.taiwanensis MSHGIGRSGDIMALQPKAAGSSLINILSQYLVLDIIRE-AGIK--
B.hominis LAHGIGRAGDVAAIQ-KAAGSSLICELTRKMAVDFIQT-CGIT--
C.merolae MAHGMGRAGDLAASQPKACGASILVRLCAALLLDALHV-AGFR--
C.owczarzaki MAHGIGRSGDIAAIQPKAAGSSLIMKLVNIMCLDVIRL-AGVH--
E.siliculosus LSHGVGRSGDIAEVQPKAAGSSLLAKLTHALAKDALRL-AGLG--
H.arabidopsidis ----------------KAAGSSLLVQLANALAKDVLRL-AGLR--
N.gruberi LSHGIGRSGELTSNQPKAAGSSIILQLCNYLVNHAIQL-AGCK--
P.pallidum LAHGIGRSGDINEQQPKAAGSSLIQKLTNYLVLDALRI-AGLE--
P.tricornutum LSHGVGRSGDIAEPQPKALGSTVLAKLTLCLVLDAVRRGSGLHPQ
P.ultimum LCHGVGRSGDVAAVQPKAAGSSLIVQLTNALAKDLLRE-AGLR--
S.parasitica LAHGVGRSGDICAVQPKAAGSSLLVQLTNCLVLDMLHL-AGIK--
T.trahens LGHGVGRSGELAAVQPKAAGSSLMYKLANALVLHALRL-AGMR--
cons ** *:::: : : . :: .*
SecS-M.musculus -SVASCFVVPMATGMSLTLCFLTLRH-----KR-PKAKYIIWPRI
X.tropicalis -TASSCFVVPMATGMSLTLCFLTLRH-----KR-PKAKYIIWPRI
A.taiwanensis -SAAGCLVLPMATGMTLHFCLSQFHQ----------GSDILWSRI
B.hominis -EVKDCIVLPLATGMSISMCLLSLRL-----NNP-TAKYVIWFRV
C.merolae -SCRRVALLPIATGMAMTLCLLALRW-----QRP-AADRVLWIRI
C.owczarzaki -AANACIALPLATGMAMVMTLLTLAQ-----TRPPSARKVLWLRI
E.siliculosus -NARACLVLPMATGMSLALTFAALRA-----AKP-AAKTIVWPRM
H.arabidopsidis -AVXSALVLPVATGMSLCWCXLQLKKT-----RP-AARYVIWPRV
N.gruberi -NVKKSIVVPMCTGMTLALCLRSLANSL---EQP-NKKYVIWPRI
P.pallidum KSIDACLVLPMATGMTIALTLMTMRQ-----TKP-KATYVLWPRI
P.tricornutum TAAKSGILLPLCTGMSMALVLGTLRQ-----LQD-NQNIVLWSRI
P.ultimum -SITSALVLPVATGMSLTLVLLTLRAQ-----KP-DAKYVIWPRI
S.parasitica -NAKSAIVLPVATGMALLFAMLTLQAQARVPGRPHTKRYVLWPRI
T.trahens -VAKKAIIVPTATGMALVLCLLALCE-----SRH-ARRYVIWPRI
cons :* .***:: : ::* *:
SecS-M.musculus DQKSCFKSMVTAGFEPVVIENVL---EGD-E-----LRTDLKAVE
X.tropicalis DQKSCFKSMITAGFEPVVIENVL---EGD-E-----LRTDLDAVE
A.taiwanensis DQKSCFKAMLLTGAKPKIMPVKQ---NGD-A-----LQTDVDAIR
B.hominis DQKTCLKSILTTGLEPIIIDPVP---EGD-E-----LNTNLGALR
C.merolae DQKACLKCIRAAGYQIDVLENKL---DGD-Q-----VVTDMEALE
C.owczarzaki DQKSCIKAITACGFEVVVVDNAI---EGD-E-----VRTDLSALQ
E.siliculosus DQKSCLKAIVAAGFTPIVVENLI---QGD-A-----VATDVDGVR
H.arabidopsidis DQKSCFKAILAAGLTPLVLANCLV--VAD-EVCGGXLKTDLVGMA
N.gruberi DQQSVLKSIDTAGFTPIVIENVL---NEDGS-----IEANLQSIE
P.pallidum DQKSCLKSIVTASLTPIVIENQL---IDD-V-----ITTNLQTIE
P.tricornutum DQKSCFKAIQSAGLECVVVPTRL---AGD-A-----VVTDLDAFQ
P.ultimum DQKSCFKSILTAGLTPLVLENTLSE-DGD-Q-----LRTDMDGLQ
S.parasitica XQKSCFKSMVTAGLEPVVIENVL---DGD-E-----LRTDLAALE
T.trahens DQKTAFKAILTAGLTPLVVEPRKCPRGSD-A-----LVTDVDGVR
cons *:: :*.: . :: * : ::: .
SecS-M.musculus AKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV
X.tropicalis AKITELGAENILCVHSTTSCFAPRVPDRVEELAVICKKYEIPHVV
A.taiwanensis NALIAGGKDNIRCVITTTSTFAPREPDDVVAVAKL----------
B.hominis EKLESIKREEILCIIPTTSVFAPRLPDDIVGVSKLAKEFSVPVIV
C.merolae KRLAASDPSRYAAVISTTSCFAPRAPDRVVAIAQLCARYGIPHLI
C.owczarzaki HQVNTVGKDNILCIVSTTSCFAPRCPDRIVEIAKICATESIPHVI
E.siliculosus AAVESCGAENVLCVVTTTSCFAPRLPDKVDEVARICAASGVGHVI
H.arabidopsidis ALMDQYGSESILAVSSTTSCFAPRAYDAVKEIAQLCQERNIAHVI
N.gruberi SKIQQVGAENILCVLSTTSCFAPRVPDDVFEIGKICFKYGIGQVV
P.pallidum ETIKSLGAENILCVMSTTSCFAPRIPDKIIEISELCKKYDVGHVI
P.tricornutum ASLLTYG-DRVLAVVTTTSCFAPRVPDQVDAVARLCAEQCVPHVI
P.ultimum RLIDAHRSGDVLAVLSTTSCFAPRGYDDVEAIARVCQTHDIAHVI
S.parasitica AKMRELGPENILCVLSTTSCFAPRGYDRVDEIAQLCRQYDIGHVI
T.trahens AAIESVGADNVLCILSTTSCFAPRTPDKVVALAELASEYGIGHVV
cons : .: .**: **** * : :. :
SecS-M.musculus NNAYGLQSSKCMHLIQQGARV--GRIDAFVQSLDKNFMVPVGGAI
X.tropicalis NNAYGVQSSKCMHLIQQGARV--GRIDAFVQSLDKNFMVPVGGAV
A.taiwanensis ---------------------------------------------
B.hominis NNAYGLQSGATCKAIDRAIRV--GRIDMLVSSTDKNMLVPVGGAL
C.merolae NHAYGVQSRRCNGLVCAACRL--GRVDAVIFSFDKNFMVPVGGAG
C.owczarzaki NNAYGIQSSKITALIQDAHKA--GRVDAFVQSSDKNLMVPVGGAL
E.siliculosus NNAYGVQCSKTCRLVNRAMAV--GRVDAVVQSTDKNFLVPVGGAV
H.arabidopsidis NNAYGVQASACVHQIDLAMRI--GRVDAVVQSLDKNFLVPVGGAI
N.gruberi NNAYGVQSKIIMERINKTIASSKSTITCFVQSTDKNFMVPVGGAV
P.pallidum NNAYGLQCTKITHQISQSVRL--GRVDYVVQSTDKNFMVPVGGAI
P.tricornutum NNAYGLQSSDTSKLLNRACAV--GRVDAIVCSTDKNFMVPIGGAI
P.ultimum NNAYGVQASKCTHVVNQAMRV--GRVDAIVQSLDKNFMVPVGGAI
S.parasitica NNAYGLQSSKCTHLVNQAFRL--GRVDACIQSTDKNFLVPVGGAV
T.trahens NNAYGVQSRRCMGLLNEAARV--GRLDAFVQSTDKNFMVPVGGAV
cons
SecS-M.musculus IA-GF-NEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKL
X.tropicalis IA-GF-SDSFVQEISKMYPGRASASPSLDVLITLLSLGASGYNKL
A.taiwanensis ---------------------------------------------
B.hominis VY-SP-QSGMVDLVRKNYPGRASMSPILDVFITLLSMGKRELRSV
C.merolae VA-GT-SPTFIEAVESLYPGRASVAPVVDLFITLLQLGRDGFSGL
C.owczarzaki VA-GH-DRAFIKRIGEMYPGRASAAPSVDIFITLLSMGQQGFRSL
E.siliculosus VC-GP-DATFIEQVGKSYAGRASSGPCLDLFITLLSMGQEGWRRL
H.arabidopsidis VC-ST-SSEIVDSVAKFYPGRASATPALDFFITMLQMGKNGYRRL
N.gruberi VS-SGSDITFIDKVSKIYAGRASMTPILDLFITLLSMGKDGWEKL
P.pallidum VA-SP-LAENIDRLAKNYPGRASGAPILDLFITLLSMGRAGYRRL
P.tricornutum VL-SP-DESLIQNVGKVYAGRASASPMLDLFITLCSMGLRGYQQL
P.ultimum VC-AP-SAEMVASVSKCYPGRAAITPTLDFFITMLQMGRKGYRQL
S.parasitica ISXSP--QAFVQAIGKMYPGRASNAPALDLFITMLHLGRRGYKAL
T.trahens VA-SA-NKAFVDAVSLLYPGRASAAPIVDLFITLLAMGEEGWTEL
cons
SecS-M.musculus LKERKEMFVYLSTQLKKLAEAHN-ERL----LQTPHNPISLAMTL
X.tropicalis LKERKEMFVYLSSELKKLAKELN-ERL----LETPHNPISLALSL
A.taiwanensis ---------------------------------------------
B.hominis LKEREDCYQYLLDRLGEVAGRYK-QRV----LRTPRNPISIAVTL
C.merolae LRERERRFQRFQAQLAPVLAKHG-ERL----LHTPDNPISFAISL
C.owczarzaki LKQRKVVFEQLRAKLGAFAVSQG-ERL----LETPHNPISLGMIQ
E.siliculosus LAERETLVEPFRRRLREVAESNG-ERL----LESSGNTISFAVTL
H.arabidopsidis LEERKHLAAYMREKLEVLAAEEG-EHV----LKVSTNEISYAMTL
N.gruberi LAEREVLFQHFVSEIESKLTNTQ-SKFSLIRGSLQRNQISFALSI
P.pallidum LDERKQLLPYFIDEMSKVVKEVGVGRI----LNTQANTISFGIAI
P.tricornutum LTSRRILLPTFTERLKEVANKYG-ERV----LECRTNCISFGVTL
P.ultimum LQERKTLAKYLQEQLQIVAHEVG-ERV----LHVPFNEISFAMTL
S.parasitica LDERKRLVPYFSAALTSVATAHG-ERV----LVTRHNDISFCLTL
T.trahens LASRADVFGYAQAELAQVAERTG-LRL----LDVRGNDISMALSL
cons
SecS-M.musculus KTIDGH------HDKAVTQLGSMLFTRQVSGARAV-PL--GNVQT
X.tropicalis TSLSEQ------SGSAVTQLGSMLFTRQVSGARVV-PL--GTSQT
A.taiwanensis ---------------------------------------------
B.hominis DNPFPEDDSFEYSDEDITKFGAMLYTRGVSGSRCV-GF--HNKKS
C.merolae EHTMLEG------GIEPTAIGSMLYARRCSGPRAV-LG--TERRL
C.owczarzaki TASSGT------FGSDATRLGSFLFTRCVSGTRCAVAL--APATS
E.siliculosus DSLVRK------KGSSAAFFGSMLFTRCVSGTRVV-PR--EQHKC
H.arabidopsidis ATFCSEVEDRQEKSRRLTLLGAMLFSRGVCGARVV-SC--LDSKC
N.gruberi DLP----------KEEALKVGVSLFYRNCTGPRVV-LK--GSSKT
P.pallidum DSNDVSK--SVLAKDNISMIGSKLFMRSCSGARVI-DVQSGQKKS
P.tricornutum DGLRTSV------SRDVSSLGAMLFQRCVSGTRVV-PR--GTVQR
P.ultimum STFSTASD-ARTKAQELTFFGAMLFSRGVSGTRVV-SC--LDNKT
S.parasitica SHV---------GGNDATFLGSMLFSRGVSGTRVV-TG--TSRAT
T.trahens DALSSECG---GDDDAVTMLGSMLFVRSVSGARVV-VP--SKTKT
cons
SecS-M.musculus V-SGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKC
X.tropicalis I-NGYVFKGFMSHSNNYPCAYLNAASAICIKKQDVDMFIKRLDKC
A.taiwanensis ---------------------------------------------
B.hominis V-GKYEFANYGGHTDHYPHAYFTSAAAIGVKKEEIDVFIDRLE--
C.merolae V-QGVLLAGYGAHIADYPVPYLNLAAAIGIRDIDIERFCRRLDEV
C.owczarzaki V-GPVSLSNFGAHHSAYHGAYLTAAAAIGMTEQEVDALIDRLTAA
E.siliculosus V-GGIDFNGYGASVTGYPHDYLTAACAAGLSTEELDEFLIRLDKA
H.arabidopsidis I-AGYEFDSFGAHYDEFPVAYVTFACVLGMQKTEVDMLMTKLRKT
N.gruberi VLPHLSFVGYGSHTDSYPHHYITLACAIGIEKEEIESFLTLLN--
P.pallidum V-GNIDFKNYGSHIDNYPTSYLTVACAIGITKEDIDLFSKRLKKV
P.tricornutum M-GGMEFCGFGSSHDAYPHAYLTAACAIGLTASEGDDFFTRLDQT
P.ultimum I-GGYTFESYGAHSDHFPAPYLTVACAIGMTKDEVDALVVKLRKT
S.parasitica I-VGHAFEGFGAHSATYPTAYLSAACAIGMTQD------------
T.trahens I-GPVTFAHYGSHSSASSEPYVNVAAAIGMTSTDIDRFVVRFEKT
cons
SecS-M.musculus LNIVRKEQTRASV---------------------------VSGAD
X.tropicalis LRLCKKEKHLAKD---------------------------EPRCA
A.taiwanensis ---------------------------------------------
B.hominis ---------------------------------------------
C.merolae LGQV-----------------------------------------
C.owczarzaki FKDL-----------------------------------------
E.siliculosus LRKAKAERAEALA---------------------------APRSQ
H.arabidopsidis IHDWRKKQNT-----------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum LHEFQKRQRRKPSRNIVLWSWIDQKSCFKAIQSAGLECVVVPTRL
P.ultimum IHEWRTKHNR-----------------------------------
S.parasitica ---------------------------------------------
T.trahens LAAWRKAHAS-----------------------------------
cons
SecS-M.musculus RN---------------------KAEDADIEEMALKLDDVL-GD-
X.tropicalis QQ---------------------TTED-DVAELAQGLGDVLQGET
A.taiwanensis ---------------------------------------------
B.hominis ---------------------------------------------
C.merolae ---------------------------------------------
C.owczarzaki ---------------------------------------------
E.siliculosus DG-------------------------------------------
H.arabidopsidis ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum EGDAVVTDLDAFQAFLLAYGDRVLAVVTTTSCFAPQVPDQV-DA-
P.ultimum ---------------------------------------------
S.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
SecS-M.musculus V-GQGPAL
X.tropicalis ASELLLSG
A.taiwanensis -------C
B.hominis -------K
C.merolae -------R
C.owczarzaki -------R
E.siliculosus --KTEAGV
H.arabidopsidis ------IS
N.gruberi -------K
P.pallidum -------L
P.tricornutum VARLCAEQ
P.ultimum ------SS
S.parasitica -------V
T.trahens ------PS
cons