T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:2 sec.
SCORE=87
*
BAD AVG GOOD
*
D.rerio : 84
H.sapiens : 87
M.musculus : 87
S.mansoni : 81
P.ultimum : 83
P.tricornutum : 87
E.siliculosus : 93
C.parvum : 89
S.parasitica : 92
P.pallidum : 85
C.owczarzaki : 89
C.muris : 91
C.Merolae : 90
B.hominis : 83
N.gruberi : 92
H.arabidopsidis : 84
T.trahens : 91
cons : 87
D.rerio MFNRMTSLWMGDLDPYMDENFIKQAFSTMG-ETAFGVKIITHRVT
H.sapiens M---AASLWMGDLEPYMDENFISRAFATMG-ETVMSVKIIRNRLT
M.musculus M---AASLWMGDLEPYMDENFISRAFATMG-ETVMSVKIIRNRLT
S.mansoni MQNFSHTIWMGDLEPYMDEMFIKRAFETSG-ENIVSVKVIRNKAT
P.ultimum ------TLWMGDIQMHWDEAFISSLFAATG-E-QPVVKLIRDKVT
P.tricornutum ------SLYVGDLAPDVNESLLFEIFSAVGP--VASIRVCRDAVT
E.siliculosus ------------------------------------VKLIRDRHR
C.parvum V---SASLYVGDLDADVTETMLYEIFNSVAV--VSSVRICRDALT
S.parasitica ------TLWMGDVQINWDEAYVSSLFDAFG-H-LPTVKLIRDKVT
P.pallidum -----TSLYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSIT
C.owczarzaki M---STCLWFGDLEPSWDESFISSLFGQAG-EPVVGVKIIKNRLT
C.muris V---SASLYVGDLDPDVTETMLYEIFNSVAV--VSSVRICRDALT
C.Merolae -----VSLYVGDLQPDVVEQNLFELFSSVGP--VVSVRVCRDVVT
B.hominis ---------------------------------------------
N.gruberi ----ARTLWMGDLDDSMDDEYVKKLFANDIRPSINSVKIIKDRNT
H.arabidopsidis ------TLWMGDIQMHWDEAFIASLFASAA-E-QPVIKLIRDKVT
T.trahens --------------------------------TVVSAKIILDAET
cons
D.rerio GGSAGYCFVEMADEASVDRCVQRLNGK---LVPGSNPPRKFKLNY
H.sapiens GIPAGYCFVEFADLATAEKCLHKINGK---PLPGATPAKRFKLNY
M.musculus GIPAGYCFVEFADLATAEKCLHKINGK---PLPGATPAKRFKLNY
S.mansoni GQTLGYGFIEFANSTSARDAMLKLNGK---LIPGA-PTRRFKLNH
P.ultimum GYPAGYGFLEFPTQRGAQLVLETYNGQ---VIP--NTLHRFRMNW
P.tricornutum RRSLGYSYVNFHQMADAERAMDTMNFS---MIKGK----PCRIMW
E.siliculosus GIVAGYGFIDFRNHETAQLVLDSLNGK---PIE--GTSLRYRLNW
C.parvum RRSLGYAYVNYNSVADAERALDTLNFT---CIRGR----PCRIMW
S.parasitica GYPAGYGFLEFDSPEAASEVLSTLNGQ---PIP--NTPHRFRLNW
P.pallidum FRSLGYAYVNFFNSIDAERALDTLNYS---QIMGR----PCRIMW
C.owczarzaki GGPAGYCFVDFGNSDRAVRVLHALNGA---QIPGLDPSRRFRLNL
C.muris RRSLGYAYVNYNSVADAERALDTLNFT---CIRSR----PCRIMW
C.Merolae RRSLGYAYVNFQNPEDAERAIDVLQFYEGPLTKNK----PIRIMW
B.hominis ----------------------------------------FRLNF
N.gruberi GKSIGYGFVEFASIEIAKAVLESYAGK---PIPTL-PNKIYRLNW
H.arabidopsidis GYPAGYGFLEFPTQRGAQQVLEMFNGL---MWCIENTVHRFRMNW
T.trahens HGSAGYGFVEFETREGAQAAMPILQGR---RVRAL----RIRINW
cons ::
D.rerio ----ATYGKRPE--PGPEFSVFVGDLTSEVDDYQLHQFFLKKFPS
H.sapiens ----ATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS
M.musculus ----ATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS
S.mansoni ----ASYGKDST--SSNECSLFVGELTEDVDDLALFNAFK-KYPT
P.ultimum ----GAGGRRIE--TGDDHSVFVGDLAPDVSDELLLTTFSTRFSS
P.tricornutum KTSYPAKLSQIV--RFQGVNLYVKNLDDSVTDDMLRDEFA-VMGT
E.siliculosus ----GAGGKRIE--QAPEYSVFVGDLSPEVTDAELKATFLGKYTS
C.parvum ----CLRDPASR--RNNDGNVFVKNLDKSIDNKTLFDTFS-LFGN
S.parasitica ----GAGGKRLE--SMEDHSVFVGDLAGDVTDDVLFSTFSAKYAS
P.pallidum ----SLRDPTKR--KSNVGNIFVKNLDKQVDNAMLFDTFS-KFGN
C.owczarzaki ----ALYSGATR--NEPEYSLFVGDLTADVTDFQLHSFFKQLYAS
C.muris ----CLRDPASR--RNNEGNVFVKNLDKSIDNKTLFDTFS-LFGN
C.Merolae ----KRSDPSQR--RNPEGNIFIKNLDKSIDNKALYDTFS-TFGT
B.hominis ----GGNSRNLN--LGDNYCLYIGDLESSVTDTQLYTIFRDKYLS
N.gruberi ----AAQNQGCG--KENIVSIFVGDLAPDVNDYMLEQTFRNRYPS
H.arabidopsidis ----GAGGRRIE--TSDDHSIFVGDLAPDVGDEVLLSTFNARFTS
T.trahens ----AVQGSRRVADEDGLHSLFVGDLCKSVDDDMLHDAFA-HFSS
cons ::: :* .: : * * .
D.rerio CKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGK
H.sapiens CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK
M.musculus CRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCK
S.mansoni CRSAKVVMT--NGKSRGYGFVRFLTESDMDKALIEMQNYCGLGYK
P.ultimum VRGAKVVIDPVTRMSKGFGFVRFGNKEEADQALQTMNGV-YCSSR
P.tricornutum ITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGK-LIANK
E.siliculosus VLGAKVVTNPMTGSSKSFGFIRFGDEQERDEALTAMN--------
C.parvum IMSCKIATDV-EGKSLGYGFIHFEHADSAKEAISRLNGA-VLGDR
S.parasitica VRGAKVVLDQMSRISKGFGFVR-----------------------
P.pallidum ILSCKIEYE--KGVSKGYGYVHFETQESSDRAIQGVNGT-MLCGK
C.owczarzaki CKTAKVVVDQ-AGTPKGFGFVRFTDSNDCLRALLEMNGAVGCGGK
C.muris IMSCKIATDS-EGNSLGYGFIHFEHPESAKEAIARLNGM-ILGDR
C.Merolae ITSLRIMRDE-KGVSKGFGFVAFSHPDEAIKAVTEMNQR-IVGQK
B.hominis FCGAKIMRETGTSVSKGYGFIQFRARDEAETALKEMN--------
N.gruberi VRGAKVVMDPKSGISKGYGFVKFADEDDMMRSMTEMQGV-YISSR
H.arabidopsidis VRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGV-FCSSR
T.trahens LTSARVMWDVRTGTSREFGFVSFRDASDAERALKTMGGT-MLGRR
cons :: . :*::
D.rerio PIRISIAVNKGNKASTY----------------------------
H.sapiens PVRLSVAIPKASRVKPV----------------------------
M.musculus PVRLSVAIPKASRVKPV----------------------------
S.mansoni PIRVSLAIPKRYNADGSLVVTTTASETSSVVPSGMPDPFTAAVAA
P.ultimum PMRVSVATDRNGKPRSG----------------------------
P.tricornutum PIFVALAQRRATAIRPL----------------------------
E.siliculosus ---------------------------------------------
C.parvum PIYVGKFQKKAERFSEK----------------------------
S.parasitica ---------------------------------------------
P.pallidum PITVEQFVSKVERFKEK----------------------------
C.owczarzaki PMRVSAATPKRPDLQQQ----------------------------
C.muris PIY------------------------------------------
C.Merolae PIYVALAQRKDQRRA------------------------------
B.hominis ---------------------------------------------
N.gruberi PVKISH---------------------------------------
H.arabidopsidis PMRVSVATERTARTTPT----------------------------
T.trahens PIRVNRANK------------------------------------
cons
D.rerio -----H-NQNNTYNTNYQQQYYQQPYNSYYPQWGY---DQYSG-Y
H.sapiens -----E--YSQMYSYSYN-QYYQ-QYQNYYAQWGY---DQNTGSY
M.musculus -----E--YSQMYSYSYN-QYYQ-QYQNYYAQWGY---DQNTGSY
S.mansoni AVTGNSAAQAEYY-QAYQ-QYYQQYYASQYAAQFY-SSESSTNGD
P.ultimum -----G--YYQQY----P-NYQQSGYQNYYGYGGYYPQYQQVGGY
P.tricornutum -----T--TSDVEVYSFE-SFV-----------------------
E.siliculosus ---------------------------------------------
C.parvum -----E--MSRVC--------------------------------
S.parasitica ---------------------------------------------
P.pallidum -----N--EHKLFIKNID-ELAT-GYHHYYCQWRR---DNQQQ--
C.owczarzaki -----Q--YQQLQQQQQQ-Q-------------------------
C.muris ---------------------------------------------
C.Merolae ---------------------------------------------
B.hominis ---------------------------------------------
N.gruberi ---------------------------------------------
H.arabidopsidis -----H---TNYYAQQYG-QYQ-TGYQTVLPMLGQ---NFYGYNA
T.trahens ---------------------------------------------
cons
D.rerio NYGYNPYA-APPPMMGPPPPMGMPPMPPDMQGSTEAHDGTEEVEE
H.sapiens SYSYPQYG-YTQ----------------------STMQTYEEVGD
M.musculus SYSYPQYG-YTQ----------------------STMQTYEEVGD
S.mansoni S---ANSG-I-TSIA---------------GGGT--LVGDATVQQ
P.ultimum G-GYGGYGSYDQ----------------------QGSQQHDEIGE
P.tricornutum ---------------------------------------------
E.siliculosus ---------------------------------------------
C.parvum ---------------------------------------------
S.parasitica ---------------------------------------------
P.pallidum ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.muris ---------------------------------------------
C.Merolae ---------------------------------------------
B.hominis ---------------------------------------------
N.gruberi ---------------------------------------------
H.arabidopsidis AYSYPQYQ-QG-----------------------AAGYGYGAYGQ
T.trahens ---------------------------------------------
cons
D.rerio DPS---------------------EDPNPQVDVEELNR-QYMERS
H.sapiens DAL---------------------EDPMPQLDVTEANK-EFMEQS
M.musculus DAL---------------------EDPAPQLDVTEANK-EFMEQS
S.mansoni HAFVDAAASHLYARALQQGTGSQEYAPEPHVLSSACDRPRHVDDL
P.ultimum DPL---------------------QSQMAMAKDTEDEE-AFKARI
P.tricornutum ----------------------------------------E----
E.siliculosus ---------------------------------------------
C.parvum ---------------------------------------------
S.parasitica ---------------------------------------------
P.pallidum ---------------------------------------QQ----
C.owczarzaki ---------------------------------------------
C.muris ---------------------------------------------
C.Merolae ---------------------------------------------
B.hominis ---------------------------------------------
N.gruberi ---------------------------------------------
H.arabidopsidis YAL---------------------QGAQPQVDYQQQQL-QQ----
T.trahens ---------------------------------------------
cons
D.rerio EELYDSLMECHWLPMDTI-TSDISMMNGS
H.sapiens EELYDALMDCHWQPLDTV-SSEI--PAMM
M.musculus EELYDALMDCHWQPLDTV-SSEI--PAMM
S.mansoni DEVFNFLESSRWHVTDPSLGLF--IKIRP
P.ultimum K----------------------EQYQVL
P.tricornutum D----------------------FSKTYA
E.siliculosus ----------------------------G
C.parvum ------------------------QYSYS
S.parasitica ----------------------------F
P.pallidum H----------------------YHTSKY
C.owczarzaki -----------------------QQQQQQ
C.muris ----------------------------V
C.Merolae --------------------------QIE
B.hominis ----------------------------G
N.gruberi ----------------------------A
H.arabidopsidis Q----------------------PQQKRI
T.trahens ----------------------------K
cons