T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:2 sec.
SCORE=86
*
BAD AVG GOOD
*
H.sapiens : 80
D.melanogaster : 78
Mus : 80
C.merolae : 87
C.muris : 93
C.owczarzaki : 82
C.parvum : 93
N.gruberi : 76
P.pallidum : 92
P.tricornutum : 91
P.ultimum : 94
P.parasitica : 92
T.trahens : 94
cons : 86
H.sapiens Y--------------------------------------------
D.melanogaster MTE------------------------------------------
Mus MASERPREPDGEDSIKLSADVKPFVPKFAGLNVAWSESSETRVFP
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki N--------------------------------------------
C.parvum ---------------------------------------------
N.gruberi KDS------SSSDSSDSS---------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens ---------------------------------------------
D.melanogaster ---------------------------------------------
Mus GCAATYYPFVQEPPAAEQKMYPEDMAFGAPTFPAQYVSSEIALHP
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens ---------------------------------------------
D.melanogaster ---------------------------------------------
Mus FAYPTYTLESAQSVCSVPTLQYDYSQARCHPGFRTAKPRHEHVCP
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens ---------------------------------------------
D.melanogaster ---------------------------------------------
Mus PPQEAKGVFKKKPSDERRACEEQKSSSRRADNAVPCEARPARGSS
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens ---------------------------------------------
D.melanogaster ---------------------------------------------
Mus HLSSRTESSLKSDGYHKRPDRKSRILAKSASTSKPEFEFSRLDFP
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens ---------------------------------------------
D.melanogaster ---------------------------------------------
Mus ELQSPKNSNMPETQKPPRWGPLGPAASNMPLLGDVGKPVADMVEG
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens ---------------------------------------------
D.melanogaster ---------------------------------------------
Mus KMVKSDHTDGAVTSNATTSSPSCTQELSWTPMGYIVRQTVSSDSA
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens -------------------------------------NKEKHIIH
D.melanogaster ---------------------------------------------
Mus AATENVTSMINLKKTTSSADAKNVSVTSEALSSNPSYNREKR-VY
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi ------------------------------------EDEKKPVSK
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens PT-------QKSKASQ-GSDLEQNEASRKNKKKKEKSTSKYEVLT
D.melanogaster ----------KIRRSR-NQDVQD-----TAIKITPRSSKYKNQHR
Mus PA-------PKAKASQ-GGELEQNESSKKNKKKKEKSKPSYEVLT
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi PAVQSKPVTKKDSSSDSSSDSSD-----DEKKPTPKPTETKQVIT
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens VQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNV
D.melanogaster KREQQTS--------------------------------------
Mus VQEPPRIEDAEEFPNLSVASERRHRGQSPKLHSKQQTQNEFKTSG
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi KKDSSDS--------------------------SDSSSDSSEDEK
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens KKSQLPVQLDLGGMLTALEKK---QHSQHAKQSSKPVVVSVGAVP
D.melanogaster -LLDFVIKPRPKTQRQTKAHK------------------------
Mus KKSQVPVQLDLGGMLAALEKQQQQQHASHAKPSSRPVVFSVGAVP
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki ---------------------------------------------
C.parvum ---------------------------------------------
N.gruberi KPVSKPIQPKPVTKKDSSSDS---DSSSSSEDEKKPTPKPTETKP
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens VLSKECASGERGRRMSQMKTPHNPLDSSA--PLMKKGKQ-R----
D.melanogaster -----------------LQKTHLAITRGSYIVYKPKGKT-R----
Mus VLSKDASSSERGRRSSQMKTPHNPLDSSA--PLMKKGKQ-R----
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki -----------------------KLDGSS--PAIRAGKQSR----
C.parvum ---------------------------------------------
N.gruberi VITKKDSSSDSDSSSDSSDDEKKPEDEKK--PVSKPAVQ-TKPIA
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens -----------------EIPKAKKPTSLKKIILKERQERKQ-RLQ
D.melanogaster -----------------LDPK-KKITRLKKSVRVYRTSKKA----
Mus -----------------EIPKAKKPTSLKKIILKERQERMQQRLQ
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki -----------------ATTKRHRPSRMRKIIRRDRQLRKRVALA
C.parvum ---------------------------------------------
N.gruberi AKKDSSDSSSDSSSEDEKKPT-PKPTETKPVITKKDSSSDS----
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens ENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGM--DE-LIST
D.melanogaster ----------------EREVAENDLEGVPVVGQDI----------
Mus ESAVSLTVASDDSQDVESGASNQTPSQDNPTGPEKT--EESVSST
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki EAVAS-TST-TATQDSRPGNSSDM-HQASTSASEMETREKDNNGD
C.parvum ---------------------------------------------
N.gruberi ----------------DSSSDSSDDEKKPVSKPAVQ--PK-PVTK
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens PSVEDKSEEPPGTELQRDTE----ASHL----APNHTTFPKIHSR
D.melanogaster --------NPNAIPLEQQVQNLSLSKTPAPNNPSQAKTVHAIHSR
Mus PVVEGESEEPAGTEFQRDPE----ACQP----APDSATFPKIHSR
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki DDAGDDEFDPEVIAAERLTA----TMHR----FRITSSAMKHHSA
C.parvum ---------------------------------------------
N.gruberi KDSSSDSDSSSSSEDEKKPA----GSSI----AVNKNTVPDSNER
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens RFRDYCSQMLSKEVDACVTDLLKELVRFQDR-MYQKDPVKAKTKR
D.melanogaster RFRSYCDNCTRPRLKELSTQLLRDLDRFQKR-AFAKNEIKARAHP
Mus RFRDYCSQMLSKEVDACVTGLLKELVRFQDR-MYQKDPVKAKTKR
C.merolae -----------------VKQLLRKLIKFQAR-LARDQSRKLRAHK
C.muris --QNYVTQILTASLDRAVSTLLNTLRAIDDR-VRWMSSGVSSKGR
C.owczarzaki RFREYCSQKVGAELDSATAIVLKQLHKFQERRLATIDPNKAKQRR
C.parvum --QNYVNQILTASLDHSVSILLNTLRAIDDR-VRWMSTVVNSKRR
N.gruberi KIREYVNYPLDPDYENIIFQMLTKLQFYQFR-LKKTDKKKFKQRL
P.pallidum --QEYMNQVCTKEIDDTAREFIVKIKQFQDN-YALKNPDK--PKK
P.tricornutum --RPYATLISDESVKPLLTEMFGELMRLQKR-AVDENNT--KVKR
P.ultimum ---------------------------LQER-AHHQNSLQDKRSR
P.parasitica ------------ELQVGVTALLGRLMQLQER-ARLTNPLKAKKTR
T.trahens --REYVDQLVPPELNRLIPPMLKELSRLQER-ARVLNPTKA--KR
cons : . .
H.sapiens RLVLGLREVLKHLKLKKLKCVIISPNCEKIQSKGGLDDTLHTIID
D.melanogaster RLVLGVREALARLRINKVKLLFLATDCEICPGESGLDATIEGLKF
Mus RLVLGLREVLKHLKLRKLKCIIISPNCEKTQSKGGLDDTLHTIID
C.merolae RYVCGIRECTRLLRAKQCLLLIVPS--------------------
C.muris VFTVGVREAMRCLRHKKLQALIVAPDIEGGDIEGGLRHHVIHILM
C.owczarzaki WFVVGLKEVFKHLQRGKLRCLIVAPDIESVRSAGGLDDAISSILT
C.parvum VFTVGVREAMRCLRHKKLKALIVAPDIEGDGVEGSLRHHVIHILL
N.gruberi RYVIGIREVLKGLKLKHIRAVVIAPNIDKVTTPGGLDTKIEEIIQ
P.pallidum RFITGLREIERAADCGKLSAVIIAPNIEDINCPGGLNESIKSIIR
P.tricornutum RLVMGLREVARGIRSHKVKLVAMANNLDD---YGAIDEKLQEILD
P.ultimum RLVLGLHEVKRGVLAKKICLLIVGTDIEQCD---VLDEKLDEILA
P.parasitica RLVFGLREVKRGLKNLKVMCLLVAYDVDECAAEGGLDDKIVELID
T.trahens RLVTGLREVVKFVKVGTAKAVIVAPDIEKVEADGGLDDKIAFIRT
cons *::* : :
H.sapiens YACEQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHK
D.melanogaster QCQQQQVPYCFPLLRRELSYALQKRAQICCVAILDFDGANATYAD
Mus CACEQNIPFVFALNRKALGRSLNKAVPVSIVGIFSYDGAQDQFHK
C.merolae ---------------------------------------------
C.muris QAQEFNIPVIFALNRHRIGRAMGKHMRMSVLGLLSTRGVERQFQT
C.owczarzaki EAHAQDRPVVFALNRRKIARALNIHVPVSAVGIFTFDGLHQEYKS
C.parvum QAQELNIPTIFALNRHRIGRAMGKHMRMSVLGLLSIRGVEKQFQA
N.gruberi KCNEQELPVFFALTKKKLGTAMKTSTKISLVGLYSMDGAFDEFKK
P.pallidum LCRSKQLLYTFALSRRIIGRLINVHIKVSAFGILFHDGAEDIYNR
P.tricornutum LADENEVPIFYEFTKRALGKVMGKTVKIAVVGVQNAEGAHQQFKK
P.ultimum IATKQEVPIIYPMSRRKLGRVLSKSVRVSCVGVYSMEGANDLFQD
P.parasitica LARANKIPVVFALSKRKLGKAVLKTIRVSCVGIYSVDGANDMFRR
T.trahens RAAELGIPLVYALSRNRLGRAMGRKLKISVAAILFYDGVNTEFNR
cons
H.sapiens MVELTVAARQ-AYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPA
D.melanogaster LLNEIEDARA-EYKRR-----------------------------
Mus MVELTMAARQ-AYKTMLETMRQEQAGEPGPQSPPSPPMQDPIPST
C.merolae ---------------------------------------------
C.muris VAHTAKVLQR-LYNFC-----------------------------
C.owczarzaki MLLQSTEGRL-AYFAMLEATHAQWVET------------------
C.parvum ISHTAQLLRK-LYHFC-----------------------------
N.gruberi AK-------------------------------------------
P.pallidum LSKLTLASRD-TFRKQQQ---------------------------
P.tricornutum LLAIS----------------------------------------
P.ultimum IL-------------------------------------------
P.parasitica CIVLWLQGGQRSKNLI-----------------------------
T.trahens MVELADEGRA-AFD-------------------------------
cons
H.sapiens EDGPPALKEKEEPHYIEIWKKHLEAYSGCTLELEESLEASTSQMM
D.melanogaster ---------------------------------------------
Mus EEGTL-PSTGEEPHYIEIWKKHLEAYSQRALELEDSLEASTSQMM
C.merolae ---------------------------------------------
C.muris ---------------------------------------------
C.owczarzaki --------------------------------------------P
C.parvum ---------------------------------------------
N.gruberi ---------------------------------------------
P.pallidum ---------------------------------------------
P.tricornutum ---------------------------------------------
P.ultimum ---------------------------------------------
P.parasitica ---------------------------------------------
T.trahens ---------------------------------------------
cons
H.sapiens NLNL
D.melanogaster -TAS
Mus NLNL
C.merolae ---N
C.muris -IEH
C.owczarzaki PPTA
C.parvum -IEN
N.gruberi --QI
P.pallidum QVQQ
P.tricornutum -TKA
P.ultimum ---K
P.parasitica -SNV
T.trahens -AAL
cons